View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_40 (Length: 436)
Name: NF9090_low_40
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 37655698 - 37655314
Alignment:
| Q |
1 |
atcgatctcagatctgagatcgataacaggaaagttagaaataggagatgacgttgatggcattgatggaggatctatcacgcttcaagagtttattgag |
100 |
Q |
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| T |
37655698 |
atcgatctcagatctgagatcgataacaggaaagttagaaataggagatgacgttgatggcattgatggaggatctatcacgcttcaagagtttattgag |
37655599 |
T |
|
| Q |
101 |
ctaagcacaacaagctatgaatctgaagaggaaatagaaaacctaaagagcacgttttctgtgtatgacattgatggcgatggtttcatcacagcgaagg |
200 |
Q |
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| T |
37655598 |
ctaagcacaacaagctatgaatctgaagaggaaatagaaaacctaaagagcacgttttctgtgtatgacattgatggcgatggtttcatcacggcgaagg |
37655499 |
T |
|
| Q |
201 |
agcttaacacgcttatgagaagcattggtcaagagtgttccttggatgaatgtgaaagaattattggtcgcgttgatagtgatggtgatggtaggattga |
300 |
Q |
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| T |
37655498 |
agcttaacacgcttatgagaagcattggtcaagagtgttccttggatgaatgtgaaagaattattggtcgcgttgatagtgatggtgatggtaggattga |
37655399 |
T |
|
| Q |
301 |
ttttgaggattttagaatcatgatgatgatgggttctcgccataatagagtcgaacatcaaacttgacatttctttctttgtatt |
385 |
Q |
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| T |
37655398 |
ttttgaggattttagaatcatgatgatgatgggttctcgccataatagagtcgaacatcaaacttgacatttctttctttgtatt |
37655314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 37653644 - 37653536
Alignment:
| Q |
220 |
aagcattggtcaagagtgttccttggatgaatgtgaaagaattattggtcgcgttgatagtgatggtgatggtaggattgattttgaggattttagaatc |
319 |
Q |
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| T |
37653644 |
aagctttggtgaagagtgctccttggccaaatgtggaagaatgataggctgcgttgacaccgatggtgatggcagaattgatttcgatgaatttagaatc |
37653545 |
T |
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| Q |
320 |
atgatgatg |
328 |
Q |
| |
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||||||||| |
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| T |
37653544 |
atgatgatg |
37653536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 44377798 - 44377731
Alignment:
| Q |
272 |
gttgatagtgatggtgatggtaggattgattttgaggattttagaatcatgatgatgatgggttctcg |
339 |
Q |
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| T |
44377798 |
gttgatagcgacggtgatggaacaattgattttgaagagtttaggatgatgatgatgatgggttctcg |
44377731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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