View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_42 (Length: 434)
Name: NF9090_low_42
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 38276347 - 38276232
Alignment:
| Q |
54 |
tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcacactgcacagactcttgccacacctgcaaggacacttc |
153 |
Q |
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| T |
38276347 |
tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcactctgcacagactcttgccacacctgcaaggacacttc |
38276248 |
T |
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| Q |
154 |
catgacttctttcatc |
169 |
Q |
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| T |
38276247 |
catgacttctttcatc |
38276232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 38276233 - 38276103
Alignment:
| Q |
289 |
tccaaaacttgacgcctattagcttaagagtttttgaaggataatagtgactttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctg |
388 |
Q |
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| T |
38276233 |
tccaaaacttgacgcgtattagctta-gagtttttgaaggataatagtgactttgaaaggaacttatcggtgagtttgagcttcaagtcttgttgatctg |
38276135 |
T |
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| Q |
389 |
actcaatgaatcacgcactggtcttgttgaag |
420 |
Q |
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| T |
38276134 |
actcaatgaatcgcacactggtcttgttgaag |
38276103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 38273219 - 38273151
Alignment:
| Q |
339 |
ctttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctgactcaatgaatcacgcact |
407 |
Q |
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| T |
38273219 |
ctttgaaaggaacttatctgcgagtttgagcttcaagtcttgttgatctgactcaattaatcacacact |
38273151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 38274680 - 38274618
Alignment:
| Q |
60 |
atttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcacactgca |
122 |
Q |
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| T |
38274680 |
atttcagttgttttggaagttaatcaccttttcaagaactagattccctaatattactctgca |
38274618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 38262997 - 38262939
Alignment:
| Q |
54 |
tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaata |
112 |
Q |
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| T |
38262997 |
tacttaatttcagtttctttggaagttaatcgccttatcaagaactagactccctaata |
38262939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 38271423 - 38271381
Alignment:
| Q |
191 |
acaacggattcggtaaatatgacttcagaaaatcttcatcgtg |
233 |
Q |
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| T |
38271423 |
acaatggattcggtaaatatgacttgagaaaatcttcaacgtg |
38271381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 38273252 - 38273216
Alignment:
| Q |
54 |
tactttatttcagttgatttggaagttaatcatcttt |
90 |
Q |
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||||| |||||||||| |||||||||||||||||||| |
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| T |
38273252 |
tacttaatttcagttgttttggaagttaatcatcttt |
38273216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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