View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_43 (Length: 423)
Name: NF9090_low_43
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_43 |
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| [»] scaffold0699 (1 HSPs) |
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Alignment Details
Target: scaffold0699 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 1190 - 1604
Alignment:
| Q |
1 |
taatattagattattatatggcaaaaacagagtaaatacgcatagtgttggtctcagataaaatagagtaactacacaaactggagaaaaacatgaaaat |
100 |
Q |
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| T |
1190 |
taatattagattattatatggcaaaaacagagtaaatacgcatagtgttggtctcagataaaatagagtaactacacaaacgggagaaaaacatgaaaat |
1289 |
T |
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| Q |
101 |
tttcaaattggtaccacaaaatataagtgtcggtcaaagatcaaaacaatcagactaaaatgttatcatacattatcataaaatcaactatattgac--- |
197 |
Q |
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| T |
1290 |
tttcaaattggtaccacaaaatataagtgtcggtcaaagatcaaaacaatcagactaaaatgttatcatacattatcataaaatcaactatattgaccaa |
1389 |
T |
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| Q |
198 |
-------gattttacagaaccaatttggtacttttaaaattgatctacatgnnnnnnncaagtatgcatttactctataaactaaaaatgaaattattca |
290 |
Q |
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| T |
1390 |
tatttgagattttacagaaccaatttggtacttttaaaattgatctacatgtttttttcaattatgcatttactctataaactaaaaatgaaattattca |
1489 |
T |
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| Q |
291 |
atgtatgctaatttctccaaatcagatatttttcgatgatagtggacatcatcaaattacttaacagtagatatagccgaataaattgataattacaaaa |
390 |
Q |
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| T |
1490 |
atgtatgctaatttctccaaatcagatatttttagatgatagtaggcatcatcaaattac-taacagtagctatagctgaataaattgataattacaaaa |
1588 |
T |
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| Q |
391 |
catcaaacacatatac |
406 |
Q |
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| T |
1589 |
catcaaacacatatac |
1604 |
T |
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