View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_51 (Length: 356)
Name: NF9090_low_51
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 4400766 - 4400440
Alignment:
| Q |
13 |
attattcttccctaattgagacattgatcaacaagatagactgtgagtttacatttaaaaaactatgatctttggattattttattggagttgacattaa |
112 |
Q |
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| T |
4400766 |
attattcttccctaattgagacattgatcaacaagatagactgtgagtttacatttaaaaaactatgatctttggattattttattggagttgacattaa |
4400667 |
T |
|
| Q |
113 |
gcaaattcttaattgggcaatagtgcaacacagtatgctactctgacttgtcctataatttcctggagtgtcggtcaatgaagtatgccagtttctttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4400666 |
gcaaattcttaattgggcaatagtgcaacacagtatgctactctgacttgtcctataatttcctggagtgtcggtcaatgaagtatgccagtttctttct |
4400567 |
T |
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| Q |
213 |
ccaagacttgaaccgcattagacagacaagtgaaggagacaaatactgaaatttgaatttttagaacatcaataacatatacatggttgtcatgtaggag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4400566 |
ccaagacttgaaccgcattagacagacaagtgaaggagacaaatactgaaatttgaatttttagaacatcaataacatatacatggttgtcatgtaggag |
4400467 |
T |
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| Q |
313 |
taattggtcacatagtcctcacatatt |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4400466 |
taattggtcacatagtcctcacatatt |
4400440 |
T |
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