View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_low_53 (Length: 354)

Name: NF9090_low_53
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_low_53
NF9090_low_53
[»] chr3 (3 HSPs)
chr3 (146-340)||(11899219-11899413)
chr3 (149-324)||(26430583-26430758)
chr3 (146-240)||(6044358-6044452)
[»] chr8 (2 HSPs)
chr8 (146-340)||(23130467-23130661)
chr8 (18-85)||(31335910-31335977)
[»] chr1 (1 HSPs)
chr1 (146-340)||(20286911-20287105)
[»] chr4 (3 HSPs)
chr4 (146-340)||(18666957-18667151)
chr4 (149-340)||(53321936-53322127)
chr4 (150-239)||(28390461-28390551)
[»] chr2 (1 HSPs)
chr2 (146-340)||(14651562-14651756)
[»] chr7 (1 HSPs)
chr7 (149-324)||(3688096-3688271)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 11899413 - 11899219
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11899413 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 11899314  T
Q  246 aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11899313 aaattgcaccaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 11899219  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 324
Target Start/End: Original strand, 26430583 - 26430758
Alignment:
Q  149 gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa 248  Q
    |||||||||||||| |||||||||||||||||||| |  |  ||||||||||  || || | ||| || | ||||||||||| ||| |||  ||| |||     
T  26430583 gcctaagctctagggaacgcagttcccatggcgtcgagccgtatcaaaggaagaagttcttgaggaggagatgtatgtcttgaaaattctgtgttcgaat 26430682  T
Q  249 ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttga 324  Q
    ||||||| ||||||||| ||||||| || ||||| || ||||||| | ||||||| || |||||||||||||||||    
T  26430683 ttgcacctagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttga 26430758  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 6044452 - 6044358
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttc 240  Q
    ||||||||| |||||  ||||||||||  ||||||||| ||||| ||||||| || || |||||||||  | | ||||||||| |||||||||||    
T  6044452 cacgcctaaactctaaaaaacgcagttttcatggcgtcgaatctgatcaaagaaaggaaatcataaggatgagatgtatgtctcgcaaactcttc 6044358  T

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Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 146 - 340
Target Start/End: Original strand, 23130467 - 23130661
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130467 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 23130566  T
Q  246 aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130567 aaattgcaccaagcttttccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 23130661  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31335977 - 31335910
Alignment:
Q  18 agatcttacgtactctttcagaactttaataaaaccaaaataattcattaattgcatatgacctccaa 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31335977 agatcttacgtactctttcagaactttaataaaaccaaaataattcattaattgcatatgacctccaa 31335910  T

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Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 20287105 - 20286911
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20287105 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 20287006  T
Q  246 aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20287005 aaattgcatcaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 20286911  T

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Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 18667151 - 18666957
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18667151 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 18667052  T
Q  246 aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18667051 aaattgcaccaagctttaccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcatgtcttga 18666957  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 340
Target Start/End: Complemental strand, 53322127 - 53321936
Alignment:
Q  149 gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa 248  Q
    |||||||||| ||| ||| |||||||||||||||| | ||| ||||||||||  || |||| ||| || | |||||||||||||||||||  ||| ||||    
T  53322127 gcctaagctcgagggaacacagttcccatggcgtcgagtcttatcaaaggaagaagttcatgaggaggagatgtatgtcttgcaaactctatgttcgaaa 53322028  T
Q  249 ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    ||||||||||||||||| ||||||| || ||||| || ||||||| | ||||||| || |||||||||||||||||| | || |||||||||    
T  53322027 ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgatgagagtaagtcttga 53321936  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 28390461 - 28390551
Alignment:
Q  150 cctaagctctaggaaac-gcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactctt 239  Q
    ||||||||||||||||  |||||||||||| |||| ||||| |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  28390461 cctaagctctaggaaattgcagttcccatgacgtcgaatctgatcaaaggaaggagatcataaggaggagatgtatgtctcgcaaactctt 28390551  T

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Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 146 - 340
Target Start/End: Original strand, 14651562 - 14651756
Alignment:
Q  146 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||||||||||||||||||  ||||||    
T  14651562 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaggaggggctgtatgtcttgcaaactcaccgtttg 14651661  T
Q  246 aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttga 340  Q
    || ||||||||| ||||||| ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  14651662 aatttgcaccaatctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttga 14651756  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 324
Target Start/End: Original strand, 3688096 - 3688271
Alignment:
Q  149 gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa 248  Q
    |||||||||| ||| |||||||||||||||||||| |  || ||||||||||  || |||| ||| || | ||||||||||| |||||||  ||| |||     
T  3688096 gcctaagctcgagggaacgcagttcccatggcgtcgagccttatcaaaggaagaagttcatgaggaggagatgtatgtcttgtaaactctgtgttcgaat 3688195  T
Q  249 ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttga 324  Q
    ||||||||||||||||| ||||||| || ||||| || ||||||| | ||||||| || |||||||||||||||||    
T  3688196 ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttga 3688271  T

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