View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_54 (Length: 352)
Name: NF9090_low_54
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 41717080 - 41716762
Alignment:
| Q |
16 |
ggacatcagggctaaggccgacaattagtatgcaacaaagaaaaaagtagttcttcaaacaaaactctgtgaactagctgctcactcccagataacttct |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717080 |
ggacttcagggctaaggccgacaattagtatgcaacaaagaaaaaagtatttcttcaaacaaaactctgtgaactagctgctcactcccagataacttct |
41716981 |
T |
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| Q |
116 |
agcattggcgattctgtttcctttctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaattttggcttgaa |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716980 |
agcattggcgattctctttcctttctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaattttggcttgaa |
41716881 |
T |
|
| Q |
216 |
aaccagagagatttttccccttctctctgtttgcacctttgtatttgctatactgctctaaaagatcattttcaccaattattcctcccatgttctcatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716880 |
aaccagagagatttttccccttctctctgtttgcacctttgtatttgctatactgctctaaaagatcattttcaccaattattcctcccatgttctcata |
41716781 |
T |
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| Q |
316 |
aatccattatcaccccact |
334 |
Q |
| |
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||||||||||||||||||| |
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| T |
41716780 |
aatccattatcaccccact |
41716762 |
T |
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