View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_58 (Length: 322)
Name: NF9090_low_58
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 29203658 - 29203366
Alignment:
| Q |
14 |
cctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccagatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203658 |
cctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccagatg |
29203559 |
T |
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| Q |
114 |
aaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatctcag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203558 |
aaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatctcag |
29203459 |
T |
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| Q |
214 |
gtcttccacgcaatcaacgatatactggaaagcactttcgccacagctgttcgcatttgcaacagcacgagctatttcaactagcttgtttat |
306 |
Q |
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| T |
29203458 |
gtcttccacgcaatcaacgatatcctggaaagcactttcgtcacagctgttcgcatttgcaacagcacgagctatttcaactagcttgtttat |
29203366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 12648218 - 12648510
Alignment:
| Q |
14 |
cctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccagatg |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
12648218 |
cctgtgtctaatattgacattagcggttttagaaaatatctggaaaaatcttatcgatcataaaaatcaccaaaatacatggttgtcctgaaacctgatg |
12648317 |
T |
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| Q |
114 |
aaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatctcag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12648318 |
aaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacacatctcag |
12648417 |
T |
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| Q |
214 |
gtcttccacgcaatcaacgatatactggaaagcactttcgccacagctgttcgcatttgcaacagcacgagctatttcaactagcttgtttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648418 |
gtcttccacgcaatcaacgatatactggaaagcactttcgtcacagctgttcgcatttgcaacagcacgagctatttcaactagcttgtttat |
12648510 |
T |
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