View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_6 (Length: 814)
Name: NF9090_low_6
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 765; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 1 - 797
Target Start/End: Complemental strand, 37881202 - 37880406
Alignment:
| Q |
1 |
acccaatgaacccatcatttctgaacttattaggtggtgctcaagctttcatgaaccctgaattgttaaagctagctgcaactgccacattattaaacaa |
100 |
Q |
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| T |
37881202 |
acccaatgaacccatcatttctgaacttattaggtggtgctcaagctttcatgaaccctgaattgttaaagctagctgcaacggccacattattaaacaa |
37881103 |
T |
|
| Q |
101 |
caacataaatttgggttcgcataatcaacaacaaatcaataatgctgctaatggtactcaacaacaagtgcaaaatcaagtttacaatcaagatcaattt |
200 |
Q |
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| T |
37881102 |
caacataaatttgggttcgcataatcaacaacaaatcaataatgctgctaatggtactcaacaacaagtgcaaaatcaagtttacaatcaagatcaattt |
37881003 |
T |
|
| Q |
201 |
caaataccaactcaaactcacaatgtgaataatggcttatttggaaacatgagttgttcaagttcagctgaaaatacaaatccttgttattttggagagg |
300 |
Q |
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| T |
37881002 |
caaataccaactcaaacacacaatgtgaataatggcttattaggaaacatgagttgttcaagttcagctgaaaatacaaatccttgttattttggagagg |
37880903 |
T |
|
| Q |
301 |
acttgatttctaaacaatattcagaattgtttcattgcctaaataatgatggaaacaaaaacagtatgggatatgaatcagttatatcgactacgccttt |
400 |
Q |
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| T |
37880902 |
acttgatttctaaacaatattcagaattgtttcattgcctaaataatgatggaaacaaaaacagtatgggatatgaatcagttatatcgactacgccttt |
37880803 |
T |
|
| Q |
401 |
atcgacgacaccaactccatcaccaacttatgtgaatagctgcacagaggaagagagggatacatattgcagtgacatattcaagttcgaaattccggag |
500 |
Q |
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| T |
37880802 |
atcgacgacaccaactccatcaccaacttatgtgaatagctgcacagaggaagagagggatacatattgcagtgacatattcaagttcgaaattccggag |
37880703 |
T |
|
| Q |
501 |
agtactttggatattaatgatttcttgtaaatgtgtgtatatacgattgcaaactttgttcaatatgcacaagtaatatagttttgtatcgtgcacgagt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||| |
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| T |
37880702 |
agtactttggatattaatgatttcttgtaaatgtgtgtatatacgattgcagactttgtttaatatgaacaagtaagatagttttgtatcgtgcacgagt |
37880603 |
T |
|
| Q |
601 |
ttatttttcattattggatcaataaatctaatagtatgttttattgatcaaatagcgaaagttaatttatgcatgatgcaagacttacgtcacttgcgta |
700 |
Q |
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| T |
37880602 |
ttatttttcattattggatcaataaatctaatagtatgttttattgatcaaatagcgaaagttaatttatgcatgatgcaagacttacgtcacttgcgca |
37880503 |
T |
|
| Q |
701 |
ttgtagaattagatgtatgtaaacttttagtttgcattctttattcttggtgttatttaattttggggtcattaggaataatttgttgtcgtgatgt |
797 |
Q |
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| T |
37880502 |
ttgtagaattagatgtatgtaaacttttagtttgcattctttattcttggtgttatttaattttggggtcattaggaataatttgttgtcgtgatgt |
37880406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 686
Target Start/End: Complemental strand, 38318114 - 38318068
Alignment:
| Q |
640 |
tttattgatcaaatagcgaaagttaatttatgcatgatgcaagactt |
686 |
Q |
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| T |
38318114 |
tttattgatcaaatagtgaaagctaatttatatatgatgcaagactt |
38318068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 701
Target Start/End: Original strand, 26219789 - 26219827
Alignment:
| Q |
663 |
taatttatgcatgatgcaagacttacgtcacttgcgtat |
701 |
Q |
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| T |
26219789 |
taatttatgcatgatgcaagacttatctcacttgcgtat |
26219827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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