View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
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 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_low_61 (Length: 302)

Name: NF9090_low_61
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_low_61
NF9090_low_61
[»] chr8 (27 HSPs)
chr8 (74-284)||(27885686-27885884)
chr8 (62-284)||(27979707-27979917)
chr8 (62-284)||(28037009-28037219)
chr8 (74-284)||(27967599-27967797)
chr8 (74-284)||(28024585-28024783)
chr8 (24-146)||(27979579-27979701)
chr8 (52-277)||(27872432-27872654)
chr8 (24-102)||(27884323-27884401)
chr8 (24-102)||(27885603-27885681)
chr8 (24-102)||(27967516-27967594)
chr8 (24-102)||(28024502-28024580)
chr8 (24-102)||(28036848-28036926)
chr8 (62-146)||(27979662-27979746)
chr8 (62-146)||(28036964-28037048)
chr8 (62-145)||(27872247-27872330)
chr8 (62-146)||(27872157-27872241)
chr8 (62-146)||(27872202-27872286)
chr8 (62-146)||(27872292-27872376)
chr8 (74-146)||(28036931-28037003)
chr8 (62-143)||(27872400-27872478)
chr8 (74-139)||(27884406-27884471)
chr8 (62-134)||(27872337-27872409)
chr8 (100-160)||(27872393-27872453)
chr8 (24-97)||(27872086-27872159)
chr8 (62-113)||(27885719-27885770)
chr8 (62-113)||(27967632-27967683)
chr8 (62-113)||(28024618-28024669)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 27885686 - 27885884
Alignment:
Q  74 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggtagaggactgcttg 173  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||            |||||||||||||||    
T  27885686 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgtaggatctg------------gtagaggactgcttg 27885773  T
Q  174 gtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27885774 gtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 27885873  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 27979707 - 27979917
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggta 161  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |||||||            |||    
T  27979707 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgttggatctg------------gta 27979794  T
Q  162 gaggactgcttggtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaa 261  Q
    ||||||||||||||||  |||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27979795 gaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaa 27979894  T
Q  262 taatgatggcattgtacctgatg 284  Q
    |||||||||||||||||||||||    
T  27979895 taatgatggcattgtacctgatg 27979917  T

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Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 28037009 - 28037219
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggta 161  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |||||||            |||    
T  28037009 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgttggatctg------------gta 28037096  T
Q  162 gaggactgcttggtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaa 261  Q
    ||||||||||||||||  |||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037097 gaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaa 28037196  T
Q  262 taatgatggcattgtacctgatg 284  Q
    |||||||||||||||||||||||    
T  28037197 taatgatggcattgtacctgatg 28037219  T

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Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 27967599 - 27967797
Alignment:
Q  74 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggtagaggactgcttg 173  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||            |||||||||||||||    
T  27967599 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgttggatctg------------gtagaggactgcttg 27967686  T
Q  174 gtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 273  Q
    ||||  |||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967687 gtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 27967786  T

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Target: chr8; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 28024585 - 28024783
Alignment:
Q  74 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggtagaggactgcttg 173  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||            |||||||||||||||    
T  28024585 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgttggatctg------------gtagaggactgcttg 28024672  T
Q  174 gtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 273  Q
    ||||  |||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28024673 gtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcat 28024772  T

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Target: chr8; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 27979579 - 27979701
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttgg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||    
T  27979579 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtgg 27979678  T
Q  124 tggacttcctgttgtaggatctg 146  Q
    ||||||||||| |||||||||||    
T  27979679 tggacttcctggtgtaggatctg 27979701  T

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Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 277
Target Start/End: Original strand, 27872432 - 27872654
Alignment:
Q  52 aggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatct-gtg-- 148  Q
    ||||||||| |||||||||||||||||||  ||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||      
T  27872432 aggatctggtggactgcctggtggtggtggacttcctgttgtaggatttggtggaggactgccttttggtggtggacttcctgttgtaggatctggtgga 27872531  T
Q  149 ggactgcc---tggtagaggactgc---ttggtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattcttggtggatagtgccgtg 242  Q
    ||||||||   |||| | ||||| |   |||  |||||||||| |  |||||||||||            ||||||||||||||||||||||||||||||    
T  27872532 ggactgcctggtggtggtggacttcctgttgtaggcatcgtgggaatactgcctattg------------ttggtccaattcttggtggatagtgccgtg 27872619  T
Q  243 aaggtgcgcatattggaaataatgatggcattgta 277  Q
    |||||| |||||||||||||||||| ||| |||||    
T  27872620 aaggtgggcatattggaaataatgacggcgttgta 27872654  T

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Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 27884323 - 27884401
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27884323 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27884401  T

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Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 27885603 - 27885681
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27885603 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27885681  T

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Target: chr8; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 27967516 - 27967594
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27967516 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 27967594  T

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Target: chr8; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28024502 - 28024580
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28024502 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 28024580  T

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Target: chr8; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28036848 - 28036926
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtaggatctgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28036848 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtggacttcctggtgtaggatctgg 28036926  T

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Target: chr8; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 27979662 - 27979746
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  27979662 ggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtaggatctg 27979746  T

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Target: chr8; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 28036964 - 28037048
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  28036964 ggactgcctggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtaggatctg 28037048  T

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Target: chr8; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 27872247 - 27872330
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatct 145  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  27872247 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgccttttggtggtggacttcctgttgtaggatct 27872330  T

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Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 27872157 - 27872241
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    ||||||||||||||| |||  ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27872157 ggactgcctggtggtcgtggacttcctaatgtaggatctggtggaggactgcctgttggtggtggacttcctgttgtaggatctg 27872241  T

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Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 27872202 - 27872286
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    |||||||||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  27872202 ggactgcctgttggtggtggacttcctgttgtaggatctggtggaggactgcctggtggtggtggacttcctgttgtaggatctg 27872286  T

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Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 27872292 - 27872376
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    |||||||||  ||||||||  ||||||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  27872292 ggactgccttttggtggtggacttcctgttgtaggatctagtggaggactgcctggtggtggtggacttcctgttgtaggatctg 27872376  T

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Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 28036931 - 28037003
Alignment:
Q  74 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggatctg 146  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  28036931 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgtaggatctg 28037003  T

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Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 27872400 - 27872478
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgtaggat 143  Q
    |||||||||||||||||||  ||||||| |||||||||||||   |||||||||| || |||||||||||||||||||||||    
T  27872400 ggactgcctggtggtggtggacttcctgttgtaggatctggt---ggactgcctggtggtggtggacttcctgttgtaggat 27872478  T

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Target: chr8; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 27884406 - 27884471
Alignment:
Q  74 ggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctgttgta 139  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  27884406 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggtggtggacttcctggtgta 27884471  T

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Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 27872337 - 27872409
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgcctgttgttggtggacttcctg 134  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||||    
T  27872337 ggactgcctggtggtggtggacttcctgttgtaggatctggtggaggactgccttttggtggaggactgcctg 27872409  T

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Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 27872393 - 27872453
Alignment:
Q  100 tggtggaggactgcctgttgttggtggacttcctgttgtaggatctgtgggactgcctggt 160  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||||    
T  27872393 tggtggaggactgcctggtggtggtggacttcctgttgtaggatctggtggactgcctggt 27872453  T

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Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 27872086 - 27872159
Alignment:
Q  24 gttctgctactagaaaactctcccaagaaggatctgggggactgcctggtggtggtgatcttcctggtgtagga 97  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||  |||||||||||  |||||||||| ||||    
T  27872086 gttctgctactagaaaactctcccaaggaggatctagaggactgtttggtggtggtggacttcctggtggagga 27872159  T

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Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 27885719 - 27885770
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 113  Q
    |||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  27885719 ggactgcctggtggtggtggacttcctggtgtaggatctggtagaggactgc 27885770  T

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Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 27967632 - 27967683
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 113  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  27967632 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 27967683  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 28024618 - 28024669
Alignment:
Q  62 ggactgcctggtggtggtgatcttcctggtgtaggatctggtggaggactgc 113  Q
    |||||||||||||||||||  ||||||| ||| ||||||||| |||||||||    
T  28024618 ggactgcctggtggtggtggacttcctgttgttggatctggtagaggactgc 28024669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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