View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_67 (Length: 280)
Name: NF9090_low_67
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 19292076 - 19291824
Alignment:
| Q |
18 |
gatttgattgtcattatttcaattgtgaaaaacagaataaagctacattttagatgtattgtttacatccattaattcaacacttttccaaggcatacaa |
117 |
Q |
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| T |
19292076 |
gatttgattgtcattatttcaattgtgaaaaacacaataaagctacattttagatgtattgtttacatccattaattcaacacttttccaaggcatacaa |
19291977 |
T |
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| Q |
118 |
tcatcgaatgctcctgttccatca---tccctacacccaccacctttattcattctccatgtgcaatttttgcatttatctcgtttgaagtcataaatgt |
214 |
Q |
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| T |
19291976 |
tcatcaaatgctcctgttccatcagaatccctacacccaccacctttattcattctccatgtgcaatttttgcatttatctcgtttgaagtcataaatgt |
19291877 |
T |
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| Q |
215 |
caatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
267 |
Q |
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| T |
19291876 |
caatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
19291824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 19298026 - 19297781
Alignment:
| Q |
28 |
tcattatttcaattgtgaaaaacagaataaagctacattttagatgta---ttgtttacatccattaattcaacacttttccaaggcatacaatcatcga |
124 |
Q |
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| T |
19298026 |
tcattatttcaattgtgaaaaacgcaagaaagctacatttcagatgtagtattgtttacatccattaattcaacacttttccaaggtatacaaacatcga |
19297927 |
T |
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| Q |
125 |
atgctcctgttccatcat---ccctacacccaccacctttattcattctccatgtgcaatttttgcatttatctcgtttgaagtcataaatgtcaatata |
221 |
Q |
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| T |
19297926 |
acgatcctgttccatcatgatccctacacccaccatctttattcattctccacctgcaatttttgcatctatctcgtttgaaatcataaatgtcaatata |
19297827 |
T |
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| Q |
222 |
atgacgttgggggctttctttccatgtaaaactgcagaagaataat |
267 |
Q |
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| T |
19297826 |
atgacggttggggctttctttccatgtaaaactgcagaagaataat |
19297781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 7846975 - 7846929
Alignment:
| Q |
64 |
attttagatgtattgtttacatccattaattcaacacttttccaagg |
110 |
Q |
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| T |
7846975 |
attttggatgtactgtttgcatccattatttcaacacttttccaagg |
7846929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 11041150 - 11041208
Alignment:
| Q |
208 |
taaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataa |
266 |
Q |
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| T |
11041150 |
taaatttcaatataatgacgatatggacttccttgccatgtaaaactgcagaagaataa |
11041208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 9145835 - 9145931
Alignment:
| Q |
171 |
ccatgtgcaatttttgcatttatctcgtttgaagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
267 |
Q |
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| T |
9145835 |
ccatgtgcaattttcgcaattgtcgtgtttgtagtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9145931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 9180597 - 9180501
Alignment:
| Q |
171 |
ccatgtgcaatttttgcatttatctcgtttgaagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
267 |
Q |
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|||||||||||||| ||| || || ||||| |||| |||||||||| ||||||||| | |||| |||| ||||||||||| ||||||||||||| |
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| T |
9180597 |
ccatgtgcaattttcgcaattgtcgtgtttgtagtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9180501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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