View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_low_68 (Length: 264)

Name: NF9090_low_68
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_low_68
NF9090_low_68
[»] scaffold0699 (4 HSPs)
scaffold0699 (1-108)||(954-1063)
scaffold0699 (1-99)||(6162-6259)
scaffold0699 (171-227)||(1126-1182)
scaffold0699 (173-223)||(6332-6382)


Alignment Details
Target: scaffold0699 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 954 - 1063
Alignment:
Q  1 caatttggaccagagatgtgtttgggtactggtttactttggatctnnnnnnn--cagcataaaacagtaagtattaagccaaagcatctaaccagacat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  954 caatttggaccagagatgtgtttgggtactggtttactttggatctaaaaaaaaacagcataaaacagtaagtattaagccaaagcatctaaccagacat 1053  T
Q  99 taaagttttt 108  Q
    ||||||||||    
T  1054 taaagttttt 1063  T

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Target: scaffold0699; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6162 - 6259
Alignment:
Q  1 caatttggaccagagatgtgtttgggtactggtttactttggatctnnnnnnncagcataaaacagtaagtattaagccaaagcatctaaccagacatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  6162 caatttggaccagagatgtgtttgggtactggtttactttggatct-aaaaaacagcataaaacagtaagtattaagccaaagcatctaaccagacatt 6259  T

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Target: scaffold0699; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 1126 - 1182
Alignment:
Q  171 tttaccttttgtatccaaggattgtacccctcacgtaaagcctaatacaaattaaac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1126 tttaccttttgtatccaaggattgtacccctcacgtaaagcctaatacaaattaaac 1182  T

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Target: scaffold0699; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 6332 - 6382
Alignment:
Q  173 taccttttgtatccaaggattgtacccctcacgtaaagcctaatacaaatt 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6332 taccttttgtatccaaggattgtacccctcacataaagcctaatacaaatt 6382  T

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