View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_7 (Length: 805)
Name: NF9090_low_7
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 94 - 785
Target Start/End: Complemental strand, 9071238 - 9070550
Alignment:
| Q |
94 |
catattactttgatcatgcaacttcttatgatcttgcttatcagaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctgaccaacctc |
193 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9071238 |
catactactttgatcatgcaacttcttatgatcttgcttatcaaaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctaaccaacctc |
9071139 |
T |
|
| Q |
194 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071138 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaa---tgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
9071042 |
T |
|
| Q |
294 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071041 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
9070942 |
T |
|
| Q |
394 |
cttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgctcttcag |
493 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
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| T |
9070941 |
cttccaaaaaagtttttgatactcaacaattcatcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgcttttcag |
9070842 |
T |
|
| Q |
494 |
ttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgt |
593 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9070841 |
ttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgt |
9070742 |
T |
|
| Q |
594 |
tgatttggaccttgtatcttgtaccaagatgtccgacgtcaacgcgtctatgataggatcagacctgaggtctaattttctcagtttgagttggcccaaa |
693 |
Q |
| |
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||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
9070741 |
tgatttggaccttctatcttgtactaagatgttcgacgtcaacgcgtctatgatgggatcagacctgaggtataattttctcagattgagttggcccaaa |
9070642 |
T |
|
| Q |
694 |
caaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaataccaccaaacctggcattgaatgtttttattgcaacca |
785 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9070641 |
caaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaacaccaccaaacctggcattgaatgtttttattgcaacca |
9070550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 205 - 566
Target Start/End: Complemental strand, 8862986 - 8862628
Alignment:
| Q |
205 |
cccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttc |
304 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||| ||| | ||||| ||||| |||||||||||||||||||| ||| |||||||||| || | |
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| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaa---tgtactcatcct---gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcc |
8862893 |
T |
|
| Q |
305 |
tctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaa |
404 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||| | | | || |||||||||||| || || ||| | ||||| ||||||||| |||| ||||| |
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| T |
8862892 |
tctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaatcaaaccgaatttcagtgatggacccggacaattgcattcctaaaaa |
8862793 |
T |
|
| Q |
405 |
gtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatat--caaaatgttctt-cttcaactgctcttcagttaggaaa |
501 |
Q |
| |
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|||| ||| ||| ||||| |||||||||| ||||||||| ||| | | |||| | | |||||| |||| |||||| |||||||||||||||||| |
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| T |
8862792 |
gtttctgaaacttaacaactcatcatttctaccttaccgattttttccacaaccaggaacgacaaaattgtctttcttcaattgctcttcagttaggaaa |
8862693 |
T |
|
| Q |
502 |
cgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
566 |
Q |
| |
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| ||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||| |||| |
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| T |
8862692 |
caacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtccagttta |
8862628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 566
Target Start/End: Complemental strand, 8866899 - 8866497
Alignment:
| Q |
158 |
agtgcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaa |
257 |
Q |
| |
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|||||||||||| | ||||||||| || |||| ||||| ||| ||||||||| | |||||||||||||||||| || || |||||||||||| |
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| T |
8866899 |
agtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaa---tgtgtttatcct-- |
8866805 |
T |
|
| Q |
258 |
agagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaa |
357 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| |||||||| || | |||||| ||||||||||| ||| |||| ||| | | || ||||||||| |
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|
| T |
8866804 |
-gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattctttgtagattacatagactacgaa |
8866706 |
T |
|
| Q |
358 |
tcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaac |
457 |
Q |
| |
|
||| || | ||||| || ||||||||||||||| || | |||| || ||| ||| ||||| | ||||||| ||||||||| ||| |||| ||| |
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| T |
8866705 |
tcaaaccaactttcaatttcggacccagacaattgcatttcggaaaaaattctgaaacttaacaagacctcatttccaccttaccgattttattcagaat |
8866606 |
T |
|
| Q |
458 |
cggatatcaaaatgttc-ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcactt |
556 |
Q |
| |
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| ||| |||||| || |||||||| || |||||| ||| |||||||||| |||||||| || |||| |||| ||| |||||||||||||||||| | |
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| T |
8866605 |
c-aataacaaaatcatctttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtcacaagatatgatcacct |
8866507 |
T |
|
| Q |
557 |
gtccaattta |
566 |
Q |
| |
|
|||||||||| |
|
|
| T |
8866506 |
gtccaattta |
8866497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 624
Target Start/End: Complemental strand, 9087154 - 9087008
Alignment:
| Q |
478 |
ttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgatt |
577 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| | | || ||| |
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|
| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaatttacgcttcttatt |
9087055 |
T |
|
| Q |
578 |
cggacgaagatatcgttgatttggaccttgtatcttgtaccaagatg |
624 |
Q |
| |
|
| || ||| | |||| | |||||||||| ||| |||||||||||| |
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| T |
9087054 |
ctgatgaaagtgtcgtcaagttggaccttgcatcatgtaccaagatg |
9087008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 9087427 - 9087308
Alignment:
| Q |
208 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctct |
307 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||| || |||| |
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|
| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctct |
9087334 |
T |
|
| Q |
308 |
ctacctcttcaggtccaatcaaattc |
333 |
Q |
| |
|
|| || ||||||||||||||||||| |
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|
| T |
9087333 |
cttccaattcaggtccaatcaaattc |
9087308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 473 - 578
Target Start/End: Complemental strand, 9126305 - 9126200
Alignment:
| Q |
473 |
tcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgc |
572 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||||| ||||||||||| | ||| |
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|
| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaactacgatcaattattccaagggtcacaagatatgatcacatgtccaatttacgctgc |
9126206 |
T |
|
| Q |
573 |
tgattc |
578 |
Q |
| |
|
|||||| |
|
|
| T |
9126205 |
tgattc |
9126200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 566
Target Start/End: Complemental strand, 8980134 - 8980043
Alignment:
| Q |
475 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
566 |
Q |
| |
|
||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||| ||| |||| ||| |||| ||||||| || ||||||||||| |
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|
| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattta |
8980043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 383 - 510
Target Start/End: Complemental strand, 9109116 - 9108990
Alignment:
| Q |
383 |
cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa |
482 |
Q |
| |
|
||||||||||||||| ||||| |||||| || ||||||| |||||||||| ||||||| | ||| |||| ||| | |||| | ||| | ||||| ||| |
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|
| T |
9109116 |
cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa |
9109018 |
T |
|
| Q |
483 |
ctgctcttcagttaggaaacgacacttg |
510 |
Q |
| |
|
|||||||||||||| |||||| |||||| |
|
|
| T |
9109017 |
ctgctcttcagttaagaaacggcacttg |
9108990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 9126561 - 9126479
Alignment:
| Q |
208 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgat |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||| |
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|
| T |
9126561 |
ttccaactcgttaaggaatcatcacaagat---caatgtgtttatcct---gagttttgcctgtattgtac---aaatcagaaaaccatgat |
9126479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 666 - 746
Target Start/End: Complemental strand, 8862534 - 8862454
Alignment:
| Q |
666 |
taattttctcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaa |
746 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| | |||| ||| |||||| |||| ||||||||||||||||||| |||||| |
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|
| T |
8862534 |
taattttctctctttaagttggccgaaacataattgtacaaggtgcgaagcaaatggcatgaaatgcaaatggaagaacaa |
8862454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 9071329 - 9071294
Alignment:
| Q |
14 |
gagcacagagtttgttcttcctaatcacactttctt |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9071329 |
gagcacagagtttgttcttcctaatcacactctctt |
9071294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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