View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_70 (Length: 263)
Name: NF9090_low_70
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27000413 - 27000661
Alignment:
| Q |
1 |
agactcaaattcaatcataaggaggaacatttgcaatcttatgcgaaaaagttaagctttaatcatttttgtggttgaaatcaagatatattactttcga |
100 |
Q |
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| T |
27000413 |
agactcaaattcaatcataaggaggaatatttgcaatcttatgcgaaaaagttaagctttaatcattttcgtggttgaaattaagatatattactttcga |
27000512 |
T |
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| Q |
101 |
tttcgattattattttttgaggcttaatcatatttattgcctaactgctctaacttagcttattgtatcttcttttgttttgtttatcttgtaaagttaa |
200 |
Q |
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| T |
27000513 |
tttcgattatcattttttgaggcttaatcatattcattgcctaactgttctaacttagcttattgtatcttcttttgttttgtttatcttgtaaagttaa |
27000612 |
T |
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| Q |
201 |
gtcgtttctgatatatcttgtgctggaagacttgttttggttggtaatt |
249 |
Q |
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| T |
27000613 |
gtcgtttctgatacatcttgtgctgaaagatttgttttggttggtaatt |
27000661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 17174031 - 17174115
Alignment:
| Q |
51 |
gttaagctttaatcatttttgtggttgaaatcaagatatattactttcgatttcgattattattttttgaggcttaatcatattt |
135 |
Q |
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| T |
17174031 |
gttaagcttctatccttttggtggttaaagtcgaaatatattactttcgattatgattatcaattttggaggcttaatcctattt |
17174115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 30206998 - 30206920
Alignment:
| Q |
45 |
gaaaaagttaagctttaatcatttttgtggttgaaatcaagatatattactttcgatttcgattattattttttgaggc |
123 |
Q |
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| T |
30206998 |
gaaaaagttaagcttcaatttttttggtggttaaaatcaagatatattacgttcaattttgattatcattattggaggc |
30206920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 19016061 - 19016022
Alignment:
| Q |
70 |
tgtggttgaaatcaagatatattactttcgatttcgatta |
109 |
Q |
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| T |
19016061 |
tgtggttgaaatcaaaatatattacttttgatttcgatta |
19016022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 13946568 - 13946492
Alignment:
| Q |
19 |
aaggaggaacatttgcaatctt-atgcgaaaaagttaagctttaatcatttttgtggttgaaatcaagatatattac |
94 |
Q |
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| T |
13946568 |
aaggaggatcacttgcaatctttatgtgaaaaagttaaacttcagtctttttggtggctgaaatcgagatatattac |
13946492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 4646813 - 4646903
Alignment:
| Q |
39 |
ttatgcgaaaaagttaagctttaatcatttttgtggttgaaatcaagatatattactttcgatttcgattattattttttgaggcttaatc |
129 |
Q |
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| T |
4646813 |
ttatgcaaaaaggttaagttttattcattttggtggttgaagttgagatatgctacattcgactttgattataattttttgaggcataatc |
4646903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 2893405 - 2893474
Alignment:
| Q |
65 |
atttttgtggttgaaatcaagatatattactttcgatttcgattattattttttgaggcttaatcatatt |
134 |
Q |
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| T |
2893405 |
attttggtggttaaaatcgagatatgttactttcgattttgattatcatctttgtaggcttaatcgtatt |
2893474 |
T |
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