View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_71 (Length: 259)
Name: NF9090_low_71
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 21644997 - 21645225
Alignment:
| Q |
16 |
gagcagagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
115 |
Q |
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| T |
21644997 |
gagcaaagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaatatcagcctactgcttcatggtcagtttcttggcta |
21645096 |
T |
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| Q |
116 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21645097 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaatttcagattttgtaatccttatcaaaataatcttaactatt |
21645196 |
T |
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| Q |
213 |
attaatagtaaatctacttcagtatctat |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21645197 |
attaatagtaaatctacttcagtatctat |
21645225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 21623283 - 21623511
Alignment:
| Q |
16 |
gagcagagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623283 |
gagcaaagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
21623382 |
T |
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| Q |
116 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21623383 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaatttcagattttgtaatccttatcaaaataatcttaactatt |
21623482 |
T |
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| Q |
213 |
attaatagtaaatctacttcagtatctat |
241 |
Q |
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| T |
21623483 |
attcatagtaaatctacttccgtatctat |
21623511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 21597043 - 21597117
Alignment:
| Q |
140 |
attaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
212 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
21597043 |
attaaagatatgaaaaaa-aaatcttaactattaatttcagattctgtaatccttatcataataatcttaactatt |
21597117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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