View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_low_77 (Length: 237)

Name: NF9090_low_77
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_low_77
NF9090_low_77
[»] chr7 (3 HSPs)
chr7 (29-198)||(32178641-32178808)
chr7 (14-45)||(32178807-32178838)
chr7 (109-144)||(32279710-32279745)
[»] chr5 (3 HSPs)
chr5 (108-161)||(12036346-12036399)
chr5 (93-161)||(6102835-6102903)
chr5 (84-161)||(16802025-16802102)
[»] chr6 (2 HSPs)
chr6 (99-161)||(20208051-20208113)
chr6 (99-161)||(22102074-22102136)
[»] chr8 (2 HSPs)
chr8 (93-146)||(18131198-18131251)
chr8 (108-161)||(40607320-40607373)
[»] chr1 (2 HSPs)
chr1 (101-161)||(27513-27573)
chr1 (120-161)||(27160338-27160379)
[»] scaffold0299 (1 HSPs)
scaffold0299 (59-161)||(18054-18158)
[»] chr4 (2 HSPs)
chr4 (120-161)||(53142815-53142856)
chr4 (99-161)||(51100064-51100128)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 32178808 - 32178641
Alignment:
Q  29 agatatagtattgctagcattactctgtgtagaatgctaaagagtaccttcaaaatattgggtgagcagccaaaacatgtaactttttgttaaaaataat 128  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  32178808 agatatagtattgctcgcattactctgtgtagaatgctaaagagtaccctcaagatattggttgagcagccaaaacatgcaactttttgttaaaaataat 32178709  T
Q  129 gtaattattacttaatcaaatgtgaaaacttattactttatatatacaatttgttggtatgttgttataa 198  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  32178708 gtaattattacttaatcaaa--tgaaaacttattactctatatatacaatttgtcggtatgttgttataa 32178641  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 32178838 - 32178807
Alignment:
Q  14 cagagagattgttcaagatatagtattgctag 45  Q
    ||||||||||||||||||||||||||||||||    
T  32178838 cagagagattgttcaagatatagtattgctag 32178807  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 32279745 - 32279710
Alignment:
Q  109 aactttttgttaaaaataatgtaattattacttaat 144  Q
    |||||||| |||||||||||||||||||||||||||    
T  32279745 aactttttattaaaaataatgtaattattacttaat 32279710  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 12036399 - 12036346
Alignment:
Q  108 taactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||||| |||||| |||||||||||||||||||||||| || |||||||||    
T  12036399 taactttttattaaaagtaatgtaattattacttaatcaaaagtcaaaacttat 12036346  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 6102835 - 6102903
Alignment:
Q  93 agcagccaaaacatgtaactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    |||| |||||| | |||||||||| |||||| || ||||||||||||||||||||| || |||||||||    
T  6102835 agcaaccaaaataagtaactttttattaaaagtattgtaattattacttaatcaaaagtcaaaacttat 6102903  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 16802025 - 16802102
Alignment:
Q  84 tattgggtgagcagccaaaacatgtaactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    |||||| | |||| ||||||||  ||||||||| | |||| |||||||||||||||||||||||| || |||| ||||    
T  16802025 tattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattattacttaatcaaaagtcaaaatttat 16802102  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 20208113 - 20208051
Alignment:
Q  99 caaaacatgtaactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||||| || || ||||||    
T  20208113 caaaacaagtagctttttattaaaagtaatgtaattattacttaatcaaaagtcaatacttat 20208051  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 22102136 - 22102074
Alignment:
Q  99 caaaacatgtaactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||||| || || ||||||    
T  22102136 caaaacaagtagctttttattaaaagtaatgtaattattacttaatcaaaagtcaatacttat 22102074  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 18131198 - 18131251
Alignment:
Q  93 agcagccaaaacatgtaactttttgttaaaaataatgtaattattacttaatca 146  Q
    |||| |||||||| |||||||||| |||||| || |||||||||||||||||||    
T  18131198 agcaaccaaaacaagtaactttttattaaaagtagtgtaattattacttaatca 18131251  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 40607320 - 40607373
Alignment:
Q  108 taactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||||| |||||| || ||||||||||||||||||||| || |||||||||    
T  40607320 taactttttattaaaagtagtgtaattattacttaatcaaaagtcaaaacttat 40607373  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 27513 - 27573
Alignment:
Q  101 aaacatgtaactttttgttaaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||| |||||||||| | |||| || ||||||||||||||||||||| || |||||||||    
T  27513 aaacaagtaactttttataaaaagtagtgtaattattacttaatcaaaagtcaaaacttat 27573  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 27160379 - 27160338
Alignment:
Q  120 aaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||| ||||||||||||||||||||| || |||||||||    
T  27160379 aaaaatagtgtaattattacttaatcaaaagtcaaaacttat 27160338  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 18158 - 18054
Alignment:
Q  59 agaatgctaaagagtaccttcaaaatattgggtgagcagccaaaacatgtaactttttgttaaaaa--taatgtaattattacttaatcaaatgtgaaaa 156  Q
    ||||||||||| |||||| |||    ||||| | |||| |||||||| |||||||||| | |||||  |  ||||||||||||||||||||| || ||||    
T  18158 agaatgctaaacagtaccgtcagggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaa 18059  T
Q  157 cttat 161  Q
    |||||    
T  18058 cttat 18054  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 53142815 - 53142856
Alignment:
Q  120 aaaaataatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    |||||| |||||||||||||||||||||| || |||||||||    
T  53142815 aaaaatgatgtaattattacttaatcaaaagttaaaacttat 53142856  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 51100128 - 51100064
Alignment:
Q  99 caaaacatgtaactttttg-ttaaaaa-taatgtaattattacttaatcaaatgtgaaaacttat 161  Q
    ||||||| ||||||||||  ||||||| || ||||||||||||||||||||| || |||||||||    
T  51100128 caaaacaagtaacttttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttat 51100064  T

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