View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_78 (Length: 233)
Name: NF9090_low_78
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 40772496 - 40772693
Alignment:
| Q |
16 |
agaggaatcaatttccattgtcaattcaataaccatataaactagtcaaatggattaaaacaac-gtgttagtcagatggactaacacaattccaagtga |
114 |
Q |
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| T |
40772496 |
agaggaatcaatttccattgtcaattcaataac--tgtaaactagtcagatggattaaaacatctgtgttagtcagatggactaacacaatcccaagtga |
40772593 |
T |
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| Q |
115 |
ggacttaccagggccggtctagtatatacaaatccttgagcagatttttcccatctgcacccccaagcacaaacagtttattaccaatagtcccttggag |
214 |
Q |
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|||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
40772594 |
ggacttactgg----tgtctggtatatacaaatccttgagcagatttttcccatctgcacctccaagcacaaacagtttatcaccaacagtcccttggag |
40772689 |
T |
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