View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_8 (Length: 781)
Name: NF9090_low_8
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 13 - 764
Target Start/End: Complemental strand, 50663642 - 50662883
Alignment:
| Q |
13 |
attatacttcaaagatttgcagtagagagtga--ttattatatctatgttatccgaaattggataatagggaaaaataaaaggagttgcttgaacatttg |
110 |
Q |
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| T |
50663642 |
attatacttcaaagatttgcagtagagagtgagattattatatctatgttatccgaaagtggataatagggaaaaacaaaaggagttgcttgaacatttg |
50663543 |
T |
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| Q |
111 |
aaaaatctatgatctccctaaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgcacaaaagttaatgttcatcct |
210 |
Q |
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| T |
50663542 |
aaaaatctatgatctccctgaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgcacaaaagttaatgtttatcct |
50663443 |
T |
|
| Q |
211 |
tattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgattggccaattttaagtcat--tgtataaccttgattcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50663442 |
tattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgattggccaattttaagtcattgtgtataaccttgattcttt |
50663343 |
T |
|
| Q |
309 |
aaacttcctttgatttacatagttgttttcttcccttcttttctgttctacttctattgatatgttttgttgcagccaaatttacttattttgatactaa |
408 |
Q |
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| T |
50663342 |
aaacttcctttgatttacatagttgttttcttcccttcttttctgttctacttctattgatgtgttttgttgcagccaaatttacttattttgatactaa |
50663243 |
T |
|
| Q |
409 |
aagaaaaacttgtgataaaaaattgattgttggcgctttagttgccaaaata-annnnnnnnnnnaaa----ctcacagttgttttctttaatgtaaaaa |
503 |
Q |
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| T |
50663242 |
aagaaaaacttgtgataaaaaattgattgttggagctttagttgccaaaatatatatatatttttaaacatgctcacagttgttttctttaatgtaaaaa |
50663143 |
T |
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| Q |
504 |
acattgtccatatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccgacagcttctttgcacggaacggcttcctc |
603 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50663142 |
acattgtccatatttattttgattcaga-ataaaaatgtcagcggtgaatatgtccaccatgagacttccgacagcttctttgcacggaacggcttcctc |
50663044 |
T |
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| Q |
604 |
taggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactgaaatcttcctcatttagaatctca |
703 |
Q |
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| T |
50663043 |
taggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactaaaatcttcctcatttagaatctca |
50662944 |
T |
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| Q |
704 |
gcaatggcagtatacagagtgaaactgattcaaccagatggtacagagaacgaatttgatg |
764 |
Q |
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| T |
50662943 |
gcaatggcagtatacaaagtgaaactgattcaaccagatggtacagagaacgaatttgatg |
50662883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 513 - 764
Target Start/End: Complemental strand, 50653478 - 50653227
Alignment:
| Q |
513 |
atatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccgacagcttctttgcacggaacggcttcctctaggacatc |
612 |
Q |
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||||||||||| |||||| ||| ||||||||||| |||||||||||| | | |||||| | |||||||| ||| ||||||| || | ||| ||||||| |
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| T |
50653478 |
atatttatttttattcaggtatgaaaatgtcagctgtgaatatgtccgctgtgagacttacaacagcttcattgtacggaacagcgccgtctcggacatc |
50653379 |
T |
|
| Q |
613 |
ttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactgaaatcttcctcatttagaatctcagcaatggca |
712 |
Q |
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| T |
50653378 |
ttgtgctctgaggaagagtccatcaagtttgagatctgtgaagaatgtgtccaaaacatttggactaaaatcttcctcatttagagtatctgcaatggca |
50653279 |
T |
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| Q |
713 |
gtatacagagtgaaactgattcaaccagatggtacagagaacgaatttgatg |
764 |
Q |
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| T |
50653278 |
gtatacaaagtgaaactgattggaccagatggaacagagaacgaatttgatg |
50653227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 50653901 - 50653831
Alignment:
| Q |
214 |
tatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgattggccaattttaagtc |
287 |
Q |
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| T |
50653901 |
tatgtcattgttctagtatacattgtgtgtttgaaataaata---tcattatgatgatgggccacttttaagtc |
50653831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 50654052 - 50654001
Alignment:
| Q |
134 |
aaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttga |
185 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
50654052 |
aaacactttaaggtggtaggttgagaaagttttacaattccgtagaagttga |
50654001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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