View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_85 (Length: 223)
Name: NF9090_low_85
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_85 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 32219510 - 32219727
Alignment:
| Q |
1 |
ccgccctcattaatgaccaccaccgtcgtcgttgtccctttgttgtttagatccgaaactcacggcgccggcgaccaccaccttcagtctgtccttgcca |
100 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |
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| T |
32219510 |
ccgccctcgttaatgagcaccaccgtcgtcgttgtccctttgctgtttagatctgaaattcacggcgccggcggccaccaccttcagtttgtccttgcca |
32219609 |
T |
|
| Q |
101 |
ccgcgccttccattcttgtcactaccatcaccctcgttagaaaaccattacgccgtcctcaccatcgtcgtcatcgacctccaatcccttcagatctgaa |
200 |
Q |
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||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219610 |
ccgtgccctccattctcgtcactaccatcaccctcgttagaaaaccattacgtcgtcctcaccatcgtcgtcatcgacctccaatcccttcagatctgaa |
32219709 |
T |
|
| Q |
201 |
cactcctttctcaccacc |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
32219710 |
cactcctttctcaccacc |
32219727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 10519863 - 10519935
Alignment:
| Q |
147 |
attacgccgtcctcaccatcgtcgtcatcgacctccaatcccttcagatctgaacactcctttctcaccaccgtc |
221 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||||||| ||| ||||| ||||||||||||||||| |
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| T |
10519863 |
attacgccgtcctcaccaacgtcgccatcgacctccaaccccttcaaatcggaaca--cctttctcaccaccgtc |
10519935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 9069837 - 9069772
Alignment:
| Q |
158 |
ctcaccatcgtcgtcatcgacctccaatcccttcagatctgaacactcctttctcaccaccgtcga |
223 |
Q |
| |
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| T |
9069837 |
ctcaccaacgtcgtcgtcaacctctaatcccttcagatctgaacacaccattctcaccaccgtcga |
9069772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 44229662 - 44229535
Alignment:
| Q |
94 |
cttgccaccgcgccttccattcttgtcactaccatcaccctcgttagaaaaccattacgccgtcctcaccatcgtcgtcatcgacctccaatcccttcag |
193 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||| ||||| | | ||||||| |||||||||||| |||||||||||||||||| |||||||| |
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| T |
44229662 |
cttgccgccgcgccttccgtccttgtcactaccatcatcctcgccaccacaccattatatcgtcctcaccattgtcgtcatcgacctccaaccccttcag |
44229563 |
T |
|
| Q |
194 |
atctgaacactcctttctcaccaccgtc |
221 |
Q |
| |
|
|||||||||| |||||||||||||||| |
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| T |
44229562 |
atctgaacacaactttctcaccaccgtc |
44229535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 51276348 - 51276212
Alignment:
| Q |
84 |
tcagtctgtccttgccaccgcgccttccattcttgtcactaccatcaccctcgttagaaaaccattacgccgtcctcaccatcgtcgtcatcgacctcca |
183 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| | |||||||||||||||| ||||| | | ||||||| |||||||||||||||||||||||||||| || |
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| T |
51276348 |
tcagtctgtc-ttgccgccgcgccctccgtccttgtcactaccatcatcctcgccaccacaccattataccgtcctcaccatcgtcgtcatcgaccttca |
51276250 |
T |
|
| Q |
184 |
atcccttcagatctgaacactcctttctcaccaccgtc |
221 |
Q |
| |
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| |||||| ||||||||||| |||||||||||||||| |
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|
| T |
51276249 |
accccttcggatctgaacacaactttctcaccaccgtc |
51276212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20067838 - 20067905
Alignment:
| Q |
1 |
ccgccctcattaatgaccaccaccgtcgtcgttgtcccttt-gt-tgtttagatccgaaactcacggc |
66 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||||||||| || |||| |||||||||||||||||| |
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| T |
20067838 |
ccgccctcgttaatgaccaccaccatcgtcattgtccctttagtctgttaagatccgaaactcacggc |
20067905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 24953512 - 24953448
Alignment:
| Q |
157 |
cctcaccatcgtcgtcatcgacctccaatcccttcagatctgaacactcctttctcaccaccgtcg |
222 |
Q |
| |
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|||||||| | ||||| |||||||||||||| ||||||||||||||| || | ||||||||||||| |
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| T |
24953512 |
cctcaccaccatcgtcttcgacctccaatcc-ttcagatctgaacacgccgtcctcaccaccgtcg |
24953448 |
T |
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