View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9091_low_2 (Length: 289)
Name: NF9091_low_2
Description: NF9091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9091_low_2 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 18143967 - 18144229
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18143967 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
18144066 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144067 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
18144166 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144167 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
18144229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 48185283 - 48185545
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48185283 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccg |
48185382 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
48185383 |
cagaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcgga |
48185482 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
48185483 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagt |
48185545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
169 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 9293777 - 9294013
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293777 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
9293876 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293877 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
9293976 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293977 |
tttctaacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 24489234 - 24489470
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24489234 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
24489333 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489334 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
24489433 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489434 |
tttctaacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 231420 - 231246
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
231420 |
attccccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaaccca |
231321 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
231320 |
gggaccatattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctg |
231246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 25372 - 25503
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
25372 |
attctccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaata |
25471 |
T |
|
| Q |
104 |
aacggaacccacggaccatattcttctccaat |
135 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
25472 |
aacggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 34676485 - 34676575
Alignment:
| Q |
185 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataag |
276 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataag |
34676575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
27 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
126 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
127 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
179 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 8868187 - 8868319
Alignment:
| Q |
10 |
agattattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacgga |
109 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||| |
|
|
| T |
8868187 |
agataattctccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatgga |
8868284 |
T |
|
| Q |
110 |
acccacggaccatattcttctccaatctgagtttt |
144 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8868285 |
acccactgaccatattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
104 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
151 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
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