View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9092_low_12 (Length: 294)

Name: NF9092_low_12
Description: NF9092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9092_low_12
NF9092_low_12
[»] chr4 (3 HSPs)
chr4 (35-240)||(53918269-53918474)
chr4 (241-272)||(52628808-52628839)
chr4 (38-101)||(18912801-18912865)
[»] chr1 (2 HSPs)
chr1 (40-240)||(44407448-44407659)
chr1 (143-199)||(1861429-1861485)
[»] chr6 (1 HSPs)
chr6 (143-195)||(20106281-20106333)
[»] chr8 (2 HSPs)
chr8 (143-195)||(31324854-31324906)
chr8 (240-272)||(38172314-38172346)
[»] chr3 (1 HSPs)
chr3 (38-101)||(47165462-47165526)
[»] chr2 (1 HSPs)
chr2 (244-276)||(42798706-42798738)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 53918474 - 53918269
Alignment:
Q  35 cacacactataagaaatatgctatttgccagggattttgatagggacattaaacccttggcaaattttagccaaggaaaatccccggtaaaatgacattg 134  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  53918474 cacacactacaagaaatatgctatttgccagagattttgatagggacattaaacccttggcaaattttagccaaggaaaatccctgacaaaatgacattg 53918375  T
Q  135 ttaagtctgggaccacttaccatttgacagggatgagccccttacaaatgtacacatgcccctggattgagttgaccgcgaaatggaatttcaaattggc 234  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||||||    
T  53918374 ctaagtctgggaccacttaccatttgacagggatgagccccttacaaatgtacacgtgcccccaggttgagttgaccgcgaaatggaatttcaaattggc 53918275  T
Q  235 tgacat 240  Q
    ||||||    
T  53918274 tgacat 53918269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 52628839 - 52628808
Alignment:
Q  241 caacggcgaagctagcaaaaagtttatgcagg 272  Q
    ||||||||||||||||||||||||||||||||    
T  52628839 caacggcgaagctagcaaaaagtttatgcagg 52628808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 18912801 - 18912865
Alignment:
Q  38 acactataagaaatatg-ctatttgccagggattttgatagggacattaaacccttggcaaattt 101  Q
    |||||| |||||| ||| |||||||||||||||||||| |||||||  |||||  ||||||||||    
T  18912801 acactacaagaaaaatgactatttgccagggattttgacagggacaaaaaacctctggcaaattt 18912865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 44407448 - 44407659
Alignment:
Q  40 actataagaaatatgct-atttgccagggattttgatagggacattaaacccttggcaaatttt----------agccaaggaaaatccccggtaaaatg 128  Q
    |||| |||||||||||| |||||||| ||||||||| |||||||| |||||| ||||||||||           ||||||||||||||||  | ||||||    
T  44407448 actacaagaaatatgctcatttgccaaggattttgacagggacatgaaacccctggcaaatttcccaaggcctaagccaaggaaaatccctagcaaaatg 44407547  T
Q  129 acattgttaagtctgggaccacttaccatttgacagggatgagccccttacaaatgtacacatgcccctggattgagttgaccgcgaaatggaatttcaa 228  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||    
T  44407548 acattgctaagtctgggaccacttaccatttgacaggggtgagcccctcacaaatgtacacctgcccctgggttgagttgaccacgaaatgaaatttcaa 44407647  T
Q  229 attggctgacat 240  Q
    ||||||||||||    
T  44407648 attggctgacat 44407659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 1861485 - 1861429
Alignment:
Q  143 gggaccacttaccatttgacagggatgagccccttacaaatgtacacatgcccctgg 199  Q
    |||||||||||||| || |||||| || |||||| ||||||||||||||||||||||    
T  1861485 gggaccacttaccacttaacaggggtgtgcccctcacaaatgtacacatgcccctgg 1861429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 20106281 - 20106333
Alignment:
Q  143 gggaccacttaccatttgacagggatgagccccttacaaatgtacacatgccc 195  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||    
T  20106281 gggaccacttaccatttgacaggggtgaggccctcacaaatgtacacacgccc 20106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 31324906 - 31324854
Alignment:
Q  143 gggaccacttaccatttgacagggatgagccccttacaaatgtacacatgccc 195  Q
    ||||||||| |||||||||||||| |||| |||| ||||||||||||| ||||    
T  31324906 gggaccactaaccatttgacaggggtgaggccctcacaaatgtacacacgccc 31324854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 38172314 - 38172346
Alignment:
Q  240 tcaacggcgaagctagcaaaaagtttatgcagg 272  Q
    |||||||||||| ||||||||||||||||||||    
T  38172314 tcaacggcgaagttagcaaaaagtttatgcagg 38172346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 47165462 - 47165526
Alignment:
Q  38 acactataagaaatatgct-atttgccagggattttgatagggacattaaacccttggcaaattt 101  Q
    |||||| |||||||||||| |||||| ||||||||||| |||||||| |||||| |||| |||||    
T  47165462 acactacaagaaatatgctcatttgctagggattttgacagggacatgaaacccctggcgaattt 47165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 42798706 - 42798738
Alignment:
Q  244 cggcgaagctagcaaaaagtttatgcaggggct 276  Q
    |||||||||||||||||| ||||||||||||||    
T  42798706 cggcgaagctagcaaaaaatttatgcaggggct 42798738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University