View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9092_low_5 (Length: 639)

Name: NF9092_low_5
Description: NF9092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9092_low_5
NF9092_low_5
[»] chr5 (1 HSPs)
chr5 (78-304)||(33953342-33953572)
[»] scaffold0438 (5 HSPs)
scaffold0438 (305-488)||(12350-12537)
scaffold0438 (45-211)||(12645-12813)
scaffold0438 (351-488)||(9236-9373)
scaffold0438 (490-616)||(6797-6927)
scaffold0438 (248-304)||(12591-12647)
[»] chr8 (13 HSPs)
chr8 (305-488)||(26342189-26342376)
chr8 (305-488)||(26294858-26295045)
chr8 (305-488)||(26308115-26308302)
chr8 (45-211)||(26342484-26342652)
chr8 (45-208)||(26295156-26295321)
chr8 (45-208)||(26308413-26308578)
chr8 (493-616)||(26292415-26292542)
chr8 (493-616)||(26305672-26305799)
chr8 (493-616)||(26339027-26339154)
chr8 (248-304)||(26342430-26342486)
chr8 (249-304)||(26295099-26295154)
chr8 (249-304)||(26308356-26308411)
chr8 (319-434)||(8346921-8347036)
[»] chr3 (20 HSPs)
chr3 (307-425)||(1205737-1205855)
chr3 (305-401)||(1188678-1188774)
chr3 (305-370)||(1206321-1206386)
chr3 (305-434)||(5358764-5358891)
chr3 (420-487)||(8031884-8031951)
chr3 (180-249)||(147793-147862)
chr3 (56-175)||(8031695-8031812)
chr3 (305-375)||(147612-147683)
chr3 (184-249)||(1206484-1206549)
chr3 (180-249)||(24103552-24103621)
chr3 (103-184)||(742559-742637)
chr3 (103-184)||(752967-753045)
chr3 (360-425)||(1303311-1303376)
chr3 (361-425)||(1188107-1188171)
chr3 (180-247)||(1188884-1188952)
chr3 (105-183)||(7435993-7436068)
chr3 (340-401)||(1301246-1301307)
chr3 (531-592)||(5359787-5359847)
chr3 (94-183)||(24103436-24103525)
chr3 (458-488)||(5358917-5358947)
[»] chr2 (4 HSPs)
chr2 (118-185)||(43865743-43865808)
chr2 (185-232)||(43849635-43849682)
chr2 (98-185)||(43862203-43862287)
chr2 (141-185)||(43849563-43849607)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 78 - 304
Target Start/End: Original strand, 33953342 - 33953572
Alignment:
Q  78 atccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcg- 176  Q
    |||||||| | | ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33953342 atccctctaagttgggtcagttacatgaatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcga 33953441  T
Q  177 ---atactttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 273  Q
       |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33953442 tcgatactttgaaaaacttttgtatccttcaccatgttttttctgtagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 33953541  T
Q  274 ttcaattgaaagaaattacacactgttaagt 304  Q
    |||||||||||||||||||||||||||||||    
T  33953542 ttcaattgaaagaaattacacactgttaagt 33953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 305 - 488
Target Start/End: Complemental strand, 12537 - 12350
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 400  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12537 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 12438  T
Q  401 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 488  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  12437 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 12350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 12813 - 12645
Alignment:
Q  45 gtctagcaagtcaactaaaatcaaacaaacca--tatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 142  Q
    |||||||||||||||||||| ||| |||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12813 gtctagcaagtcaactaaaaacaaccaaaccacatatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 12714  T
Q  143 aaataagcaaaagtgttcttgtaataatgcatcgatactttgaaaaacttctgtatccttcaccatgtt 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  12713 aaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttctgtatcgttcaccatgtt 12645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 351 - 488
Target Start/End: Complemental strand, 9373 - 9236
Alignment:
Q  351 aagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaattcaagagact 450  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9373 aagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaaatctagagact 9274  T
Q  451 attctagaaaaatgcaaaggaattagacacaagattaa 488  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9273 attctagaaaaatgcaaaggaattatacacaagattaa 9236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 490 - 616
Target Start/End: Complemental strand, 6927 - 6797
Alignment:
Q  490 aagtgacttataacatgatc-atgtgggtttgtttactttacctct--atcttgt-ggaatggtaatgaatgaataattagaattgtatacagaaaatgg 585  Q
    |||||||||||||||||||  |||||||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6927 aagtgacttataacatgatgtatgtgggtttgtttactttacctctctatcttgttggaatggtaa-gaatgaataattagaattgtatacagaaaatgg 6829  T
Q  586 ccatagacagagagaataaaaa-tagtaaagc 616  Q
    ||||  ||| |||||||||||| |||||||||    
T  6828 ccatgtacatagagaataaaaattagtaaagc 6797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 12647 - 12591
Alignment:
Q  248 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 304  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  12647 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 12591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 305 - 488
Target Start/End: Complemental strand, 26342376 - 26342189
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 400  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26342376 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 26342277  T
Q  401 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 488  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26342276 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26342189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 305 - 488
Target Start/End: Complemental strand, 26295045 - 26294858
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 400  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26295045 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26294946  T
Q  401 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 488  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26294945 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26294858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 305 - 488
Target Start/End: Complemental strand, 26308302 - 26308115
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 400  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26308302 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26308203  T
Q  401 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 488  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26308202 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26308115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 26342652 - 26342484
Alignment:
Q  45 gtctagcaagtcaactaaaatcaaacaaacca--tatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 142  Q
    |||||||||||||||||||| ||| |||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342652 gtctagcaagtcaactaaaaacaaccaaaccacatatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 26342553  T
Q  143 aaataagcaaaagtgttcttgtaataatgcatcgatactttgaaaaacttctgtatccttcaccatgtt 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  26342552 aaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttctgtatcgttcaccatgtt 26342484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 26295321 - 26295156
Alignment:
Q  45 gtctagcaagtcaactaaaatcaaacaaacca--tatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 142  Q
    |||||||||||||||||||| ||| |||||||  ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26295321 gtctagcaagtcaactaaaaacaaccaaaccacatatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagag 26295222  T
Q  143 aaataagcaaaagtgttcttgtaataatgcatcgatactttgaaaaacttctgtatccttcaccat 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  26295221 aaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttcggtatccttcaccat 26295156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 26308578 - 26308413
Alignment:
Q  45 gtctagcaagtcaactaaaatcaaacaaacca--tatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagag 142  Q
    |||||||||||||||||||| ||| |||||||  ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26308578 gtctagcaagtcaactaaaaacaaccaaaccacatatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagag 26308479  T
Q  143 aaataagcaaaagtgttcttgtaataatgcatcgatactttgaaaaacttctgtatccttcaccat 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  26308478 aaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttcggtatccttcaccat 26308413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 493 - 616
Target Start/End: Complemental strand, 26292542 - 26292415
Alignment:
Q  493 tgacttataacatgatc-atgtgggtttgtttactttacctct--atcttgt-ggaatggtaatgaatgaataattagaattgtatacagaaaatggcca 588  Q
    ||||||||||||||||  |||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  26292542 tgacttataacatgatgtatgtgggtttgtttactttacctctctatcttgttggaatggtaa-gaatgaataattagaattgtatacagaaaatggcca 26292444  T
Q  589 tagacagagagaataaaaa-tagtaaagc 616  Q
    |  ||| |||||||||||| |||||||||    
T  26292443 tgtacatagagaataaaaattagtaaagc 26292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 493 - 616
Target Start/End: Complemental strand, 26305799 - 26305672
Alignment:
Q  493 tgacttataacatgatc-atgtgggtttgtttactttacctct--atcttgt-ggaatggtaatgaatgaataattagaattgtatacagaaaatggcca 588  Q
    ||||||||||||||||  |||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  26305799 tgacttataacatgatgtatgtgggtttgtttactttacctctctatcttgttggaatggtaa-gaatgaataattagaattgtatacagaaaatggcca 26305701  T
Q  589 tagacagagagaataaaaa-tagtaaagc 616  Q
    |  ||| |||||||||||| |||||||||    
T  26305700 tgtacatagagaataaaaattagtaaagc 26305672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 493 - 616
Target Start/End: Complemental strand, 26339154 - 26339027
Alignment:
Q  493 tgacttataacatgatc-atgtgggtttgtttactttacctct--atcttgt-ggaatggtaatgaatgaataattagaattgtatacagaaaatggcca 588  Q
    ||||||||||||||||  |||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  26339154 tgacttataacatgatgtatgtgggtttgtttactttacctctctatcttgttggaatggtaa-gaatgaataattagaattgtatacagaaaatggcca 26339056  T
Q  589 tagacagagagaataaaaa-tagtaaagc 616  Q
    |  ||| |||||||||||| |||||||||    
T  26339055 tgtacatagagaataaaaattagtaaagc 26339027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 26342486 - 26342430
Alignment:
Q  248 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 304  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26342486 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26342430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 26295154 - 26295099
Alignment:
Q  249 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 304  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26295154 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26295099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 26308411 - 26308356
Alignment:
Q  249 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 304  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26308411 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26308356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 434
Target Start/End: Complemental strand, 8347036 - 8346921
Alignment:
Q  319 tcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaa 418  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||| ||||||    | ||  |||||||||||||||  ||| | ||||| ||||||||    
T  8347036 tcatttttattttaccagacaagtaaatcattaagaaaaaagaaagctaatccaacagtcagcatcttcaataatttagagacaatatctcgcacaccaa 8346937  T
Q  419 acagaaagtcaaagca 434  Q
    |||||||  |||||||    
T  8346936 acagaaaaccaaagca 8346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 1205855 - 1205737
Alignment:
Q  307 caaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacat 406  Q
    ||||||||||||| ||||||| || |||||||||||||||||| || ||| | |||| |||||||||  |||||||||| ||||||||||||| ||| ||    
T  1205855 caaacaagctgttgatttttatttaaccagacaaataaatcatcaataaataagaaatttaatccttcagacaatatctccaataatttaaggtctatat 1205756  T
Q  407 ctcacacaccaaacagaaa 425  Q
    |||||| ||||||||||||    
T  1205755 ctcacataccaaacagaaa 1205737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 305 - 401
Target Start/End: Complemental strand, 1188774 - 1188678
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 401  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |||||| ||||||| | |||||||||    
T  1188774 ctcaaacgagctgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaaaagtttaaggac 1188678  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 1206386 - 1206321
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatc 370  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  1206386 ctcaaacaagttgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatc 1206321  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 305 - 434
Target Start/End: Original strand, 5358764 - 5358891
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactac 404  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||| ||||| || ||||| ||||| ||  | ||| |||||||| ||||||| |||||     
T  5358764 ctcaaacaagctggtaattttta-tttaccagacaagtaaatcatcaagaacaaagaaagctaatcattcag-caacatcttcaacaatttaaagactat 5358861  T
Q  405 atctcacacaccaaacagaaagtcaaagca 434  Q
    ||||||||||||||||||||| ||||||||    
T  5358862 atctcacacaccaaacagaaaatcaaagca 5358891  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 487
Target Start/End: Original strand, 8031884 - 8031951
Alignment:
Q  420 cagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagatta 487  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8031884 cagacagtcaaagctataaattcacaagactattctagaaaaatgcaaaggaattagacacaagatta 8031951  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 147862 - 147793
Alignment:
Q  180 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 249  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  147862 ctttgaataacttttgtatccttcaccatgttttttctgcaacccaacatcctgaattcacctatgcagt 147793  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 8031695 - 8031812
Alignment:
Q  56 caactaaaatcaaacaaaccatatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaag 155  Q
    |||| |||| ||| |||||||||| ||| | | |||||||||| || |||||||||||||| ||||||||||||||| |||||  | || ||||||||||    
T  8031695 caacaaaaaacaaccaaaccatattcctttaagtcgggtcggtgacatggatcaaaagacatccataaataagtctaacaagt--aaaattaagcaaaag 8031792  T
Q  156 tgttcttgtaataatgcatc 175  Q
    | ||||||||| ||||||||    
T  8031793 tattcttgtaacaatgcatc 8031812  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 147683 - 147612
Alignment:
Q  305 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaag-aaaaatgaaagttaatcctttt 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  147683 ctcaaacaagcttttcatttttagtttaccagacaaataaatcatcaagaaaaaaataaagttaatcctttt 147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 1206549 - 1206484
Alignment:
Q  184 gaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 249  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||    
T  1206549 gaaaaacttttgtatccttcaccatgttttttctgcaaccgaacatcatgtgttcacctatgcagt 1206484  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 24103552 - 24103621
Alignment:
Q  180 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 249  Q
    ||||||||||||| ||||||||||||||||||||||||||| || |||| | ||| ||||||||||||||    
T  24103552 ctttgaaaaacttttgtatccttcaccatgttttttctgcaacctaacaacctgtgttcacctatgcagt 24103621  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 742559 - 742637
Alignment:
Q  103 tggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 184  Q
    |||||||||||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  742559 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 742637  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 752967 - 753045
Alignment:
Q  103 tggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 184  Q
    |||||||||||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  752967 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 753045  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 1303311 - 1303376
Alignment:
Q  360 gaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 425  Q
    |||| |||||||||  |||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  1303311 gaaatttaatccttcagacaatatctccaataatttaaggtctatatctcacataccaaacagaaa 1303376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 1188171 - 1188107
Alignment:
Q  361 aaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 425  Q
    |||||||||||||  ||||| |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  1188171 aaagttaatccttcagacaacatctccaataatataaggtctagatctcacacaccaaacagaaa 1188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 1188952 - 1188884
Alignment:
Q  180 ctttgaaaaacttctgtatccttcaccatgtt-ttttctgcagcccaacatcttgtattcacctatgca 247  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |  |||||| ||| ||||||||||||    
T  1188952 ctttgaaaaacttttgtatccttcaccatgtttttttctgcaactgaacatcctgtgttcacctatgca 1188884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 7435993 - 7436068
Alignment:
Q  105 gatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatacttt 183  Q
    |||||||||||||  || |||||||||||||||||||  ||| ||||||||||||||||| ||||| |||| |||||||    
T  7435993 gatcaaaagacacg-atgaataagtctagcaagtaga--aatcagcaaaagtgttcttgttataatccatcaatacttt 7436068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 1301246 - 1301307
Alignment:
Q  340 aataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 401  Q
    |||||||||| |||||||| ||||||||||| ||  |||||| |||||||||| ||||||||    
T  1301246 aataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaataacttaaggac 1301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 592
Target Start/End: Original strand, 5359787 - 5359847
Alignment:
Q  531 ctctatcttgtggaatggtaatgaatgaataattagaattgtatacagaaaatggccataga 592  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||    
T  5359787 ctctaacttgtggaatggtaa-gaatgaataattacaattgtataaagaaaaggtccataga 5359847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 24103436 - 24103525
Alignment:
Q  94 tcggttacgtggatcaaaagacaccc---ataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatacttt 183  Q
    |||||||| ||||||||| ||||||    |||| ||||||||||||| |||  |||||| |||||||||||||| ||||||||| ||||||||    
T  24103436 tcggttacatggatcaaatgacaccttaaataagtaagtctagcaagaaga--aataaggaaaagtgttcttgttataatgcat-gatacttt 24103525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 488
Target Start/End: Original strand, 5358917 - 5358947
Alignment:
Q  458 aaaaatgcaaaggaattagacacaagattaa 488  Q
    |||||||||||||||||||||||||||||||    
T  5358917 aaaaatgcaaaggaattagacacaagattaa 5358947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 43865743 - 43865808
Alignment:
Q  118 ccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 185  Q
    |||| |||||||||||||||||||  ||| ||||||||||||||||| |||||||||| |||||||||    
T  43865743 ccatgaataagtctagcaagtaga--aatgagcaaaagtgttcttgttataatgcatccatactttga 43865808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 43849635 - 43849682
Alignment:
Q  185 aaaaacttctgtatccttcaccatgttttttctgcagcccaacatctt 232  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  43849635 aaaaacttatgtatccttcaccatgttttttctgcaatccaacatctt 43849682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 43862203 - 43862287
Alignment:
Q  98 ttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 185  Q
    |||| ||||||||| |||||| ||| |||||| | |||||||||  ||| ||||||||||||||||| |||||| ||| |||||||||    
T  43862203 ttacatggatcaaacgacacctatatataagttt-gcaagtaga--aatgagcaaaagtgttcttgttataatggatcaatactttga 43862287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 43849563 - 43849607
Alignment:
Q  141 agaaataagcaaaagtgttcttgtaataatgcatcgatactttga 185  Q
    |||||| ||||||||||||||||| |||||| ||| |||||||||    
T  43849563 agaaatgagcaaaagtgttcttgttataatgtatcaatactttga 43849607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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