View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9092_low_7 (Length: 385)

Name: NF9092_low_7
Description: NF9092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9092_low_7
NF9092_low_7
[»] chr2 (12 HSPs)
chr2 (2-266)||(37794765-37795030)
chr2 (40-265)||(17989102-17989328)
chr2 (174-263)||(19263735-19263824)
chr2 (179-266)||(5428609-5428696)
chr2 (263-354)||(5430266-5430357)
chr2 (263-324)||(37794642-37794703)
chr2 (263-359)||(17988943-17989039)
chr2 (263-319)||(35016319-35016375)
chr2 (40-159)||(5428458-5428569)
chr2 (216-265)||(35016496-35016545)
chr2 (40-97)||(35016692-35016749)
chr2 (263-307)||(19263850-19263894)
[»] chr8 (9 HSPs)
chr8 (64-266)||(23490083-23490286)
chr8 (40-151)||(10473878-10473992)
chr8 (263-324)||(13402200-13402261)
chr8 (209-266)||(14867367-14867424)
chr8 (263-316)||(13396902-13396955)
chr8 (220-266)||(7154383-7154429)
chr8 (263-307)||(23489977-23490021)
chr8 (104-143)||(773713-773752)
chr8 (267-307)||(14370805-14370845)
[»] chr4 (21 HSPs)
chr4 (277-373)||(49583081-49583177)
chr4 (177-266)||(28146949-28147038)
chr4 (185-266)||(13198194-13198275)
chr4 (40-165)||(28146788-28146913)
chr4 (174-266)||(11440552-11440644)
chr4 (178-266)||(55606360-55606448)
chr4 (174-266)||(38411983-38412075)
chr4 (179-266)||(25967966-25968055)
chr4 (263-319)||(55606242-55606298)
chr4 (265-324)||(25968119-25968178)
chr4 (38-138)||(11440394-11440495)
chr4 (263-324)||(13198071-13198132)
chr4 (271-319)||(28147108-28147156)
chr4 (40-159)||(25967802-25967925)
chr4 (40-151)||(38412119-38412226)
chr4 (103-159)||(30839756-30839812)
chr4 (275-346)||(29866152-29866223)
chr4 (40-159)||(55606488-55606597)
chr4 (194-244)||(30839651-30839700)
chr4 (266-324)||(38411859-38411917)
chr4 (271-324)||(11440693-11440746)
[»] chr1 (15 HSPs)
chr1 (178-266)||(32617683-32617771)
chr1 (40-267)||(9457447-9457674)
chr1 (40-267)||(9461544-9461771)
chr1 (174-266)||(34664742-34664833)
chr1 (40-151)||(32617818-32617929)
chr1 (117-266)||(24699910-24700059)
chr1 (263-358)||(34664896-34664991)
chr1 (174-243)||(12990300-12990370)
chr1 (190-256)||(14081826-14081893)
chr1 (263-324)||(9457732-9457793)
chr1 (263-324)||(9461829-9461890)
chr1 (263-318)||(12990632-12990687)
chr1 (40-165)||(12990144-12990270)
chr1 (269-319)||(14081707-14081757)
chr1 (263-324)||(32617561-32617622)
[»] chr6 (9 HSPs)
chr6 (178-266)||(32296331-32296419)
chr6 (174-266)||(10117127-10117224)
chr6 (190-255)||(9177568-9177633)
chr6 (82-151)||(8169199-8169268)
chr6 (263-307)||(9177710-9177754)
chr6 (177-266)||(22509048-22509136)
chr6 (118-158)||(32296251-32296291)
chr6 (274-324)||(26660607-26660657)
chr6 (274-324)||(26766578-26766628)
[»] chr7 (16 HSPs)
chr7 (177-266)||(47363817-47363907)
chr7 (174-266)||(25636018-25636110)
chr7 (179-266)||(10493524-10493610)
chr7 (211-266)||(39653571-39653626)
chr7 (209-266)||(33049114-33049171)
chr7 (263-307)||(10493377-10493421)
chr7 (263-324)||(7493054-7493115)
chr7 (266-346)||(39653425-39653505)
chr7 (262-324)||(25635894-25635956)
chr7 (209-266)||(31742876-31742933)
chr7 (270-359)||(33049251-33049340)
chr7 (42-113)||(47363960-47364030)
chr7 (40-93)||(33048928-33048981)
chr7 (262-307)||(45435541-45435586)
chr7 (63-143)||(25636161-25636241)
chr7 (267-307)||(47363711-47363751)
[»] chr5 (20 HSPs)
chr5 (177-260)||(16341534-16341619)
chr5 (178-266)||(39426203-39426292)
chr5 (174-261)||(36491458-36491545)
chr5 (181-263)||(13424753-13424835)
chr5 (176-242)||(22927204-22927270)
chr5 (178-251)||(19967473-19967546)
chr5 (35-159)||(19967308-19967432)
chr5 (40-143)||(39426507-39426610)
chr5 (40-143)||(41283295-41283398)
chr5 (174-265)||(41283450-41283546)
chr5 (269-324)||(13424630-13424685)
chr5 (263-318)||(22927061-22927116)
chr5 (40-151)||(36491304-36491415)
chr5 (286-354)||(37247655-37247723)
chr5 (41-112)||(20141843-20141914)
chr5 (263-346)||(36491604-36491687)
chr5 (286-324)||(27983524-27983562)
chr5 (209-266)||(20141663-20141720)
chr5 (262-323)||(39426082-39426143)
chr5 (263-320)||(41283608-41283665)
[»] chr3 (7 HSPs)
chr3 (179-266)||(11783521-11783609)
chr3 (177-266)||(7299073-7299163)
chr3 (263-324)||(11783397-11783458)
chr3 (40-113)||(7298927-7298999)
chr3 (222-266)||(21926549-21926593)
chr3 (209-266)||(19596553-19596610)
chr3 (271-307)||(53527191-53527227)
[»] scaffold0989 (1 HSPs)
scaffold0989 (41-113)||(2093-2165)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 37795030 - 37794765
Alignment:
Q  2 ttgcttttctattgtagtcacttccgtgtgtggtccatggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaa-ggtataagtagccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||| |||||||||||||||    
T  37795030 ttgcttttctattgtagtcacttccgtgtgtggtccatggttttaaaaaactgtctcttaccgagataatgaccgcaacaaaaaaggtataagtagccga 37794931  T
Q  101 cgttaccgtttttctttgtttttacagagtgaacaaaaatcaccacgaaacaccgttacggctgcnnnnnnnntgtcgttcatgacaaaagacatagaat 200  Q
    | ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  37794930 cattaccatttttctttgtttttacgtagtgaacaaaaatcaccacgaaacaccgttacggctgcaaaaaaaatgtcgttcatgacaaaagacatagaat 37794831  T
Q  201 ctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  37794830 ctggatattttttcaattgagatagaagaaaatcatatttttagtacatatttgatcataaattac 37794765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 17989328 - 17989102
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||| ||||  ||| | || ||| |||| ||||||||||||||| |||||  || ||||||||||||   ||||||||  ||||||||||||    
T  17989328 ggttttaaaaaatggtccgttaccaaggaaaaggccacaacaaaaaggtataggtagcgaacattaccgtttttcaccgtttttactaagtgaacaaaaa 17989229  T
Q  140 tcaccacgaaacaccgttacggctgcnnnnnnnntgtcgttcatgacaaaagacatagaatctggatatttttt--caattgagatagatgaaaatcata 237  Q
    |||| |||||||||||||||||| ||         | ||||||||| || ||||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  17989228 tcacgacgaaacaccgttacggccgcaaaaaaca-gccgttcatgataatagacatagaatctggattttttttttcaattgagatcgatgaaaatcata 17989130  T
Q  238 tttttagtgcatatttgatcataaatta 265  Q
    |||||||| |||||||||||||||||||    
T  17989129 tttttagtacatatttgatcataaatta 17989102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 19263735 - 19263824
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaat 263  Q
    ||||||||||||||| ||| ||||||||  |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  19263735 tgtcgttcatgacaatagatatagaatcaagatattgtttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 5428609 - 5428696
Alignment:
Q  179 ttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||| ||||| | ||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  5428609 ttcatgacaatagacacaaaatttggatattatttcaattgagatagatgaaaatcatattattagtacataattgatcataaattac 5428696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 5430266 - 5430357
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaat 354  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||  | ||||||||||| ||||||| ||||||    
T  5430266 ttactatcattatttaagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaat 5430357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 37794703 - 37794642
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |  |||||||| ||||    
T  37794703 ttactatcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaat 37794642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 17989039 - 17988943
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcga 359  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| |  |||||||| |||| || |  |||||| | ||||||  |||||||||||    
T  17989039 ttactatcattatttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatccgtatcgcaacacccgtaacagccgaaattgcga 17988943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 35016375 - 35016319
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaacc 319  Q
    |||||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  35016375 ttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaacc 35016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 5428458 - 5428569
Alignment:
Q  40 ggttttaaaaaacggtctcttatc-gagaaaatggccgcaacaaaaagg-tataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaa 137  Q
    |||||||||||||||||||||  | |||||||||| ||| | ||||| | |||| |||||||||||||||||||          ||||||||||||||||    
T  5428458 ggttttaaaaaacggtctctttacagagaaaatggtcgcgataaaaaagatataggtagccgacgttaccgttt----------ttacagagtgaacaaa 5428547  T
Q  138 aatcaccacgaaacaccgttac 159  Q
    |||||| |||||||||||||||    
T  5428548 aatcacgacgaaacaccgttac 5428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 35016545 - 35016496
Alignment:
Q  216 attgagatagatgaaaatcatatttttagtgcatatttgatcataaatta 265  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  35016545 attgagatagatgaaaatcatatttttgatacatatttgatcataaatta 35016496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 35016749 - 35016692
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagc 97  Q
    ||||||||||||| |||  ||||||||||||||||||| ||||||||||||| |||||    
T  35016749 ggttttaaaaaaccgtccgttatcgagaaaatggccgcgacaaaaaggtataggtagc 35016692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 19263850 - 19263894
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  19263850 ttactatcattatttaagaattgtgcaatgttgtgattaattcac 19263894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 23490286 - 23490083
Alignment:
Q  64 gagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaatcaccacgaaacaccgttacggct 163  Q
    ||||||| |||||| ||||||||||||| |||||||| |||||| ||||||    ||||||||||||||||||||||||| ||||||||  ||||||||     
T  23490286 gagaaaaaggccgcgacaaaaaggtataggtagccgaagttaccatttttcaccatttttacagagtgaacaaaaatcacgacgaaacattgttacggcc 23490187  T
Q  164 gcnnnnnnnn-tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaa 262  Q
    ||         || |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  23490186 gcaaaaaaaaatgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaa 23490087  T
Q  263 ttac 266  Q
    ||||    
T  23490086 ttac 23490083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 10473992 - 10473878
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggt---ataagtagccgacgttaccgtttttctttgtttttacagagtgaacaa 136  Q
    |||||||||| ||||||  |||  ||||||| |||||  ||||||||||   ||| ||||||||| |||| |||||||  ||||||||||||||||||||    
T  10473992 ggttttaaaatacggtccgttactgagaaaaaggccgtgacaaaaaggtggtataggtagccgacattactgtttttcactgtttttacagagtgaacaa 10473893  T
Q  137 aaatcaccacgaaac 151  Q
    ||||||| |||||||    
T  10473892 aaatcacgacgaaac 10473878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 13402200 - 13402261
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| || ||||||||||||||||||| | ||||||||| ||||    
T  13402200 ttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaat 13402261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 14867424 - 14867367
Alignment:
Q  209 tttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattac 14867367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 13396902 - 13396955
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgaca 316  Q
    |||||||||||||||||||||| || ||||||||||||||||||| | ||||||    
T  13396902 ttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgaca 13396955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 7154429 - 7154383
Alignment:
Q  220 agatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||    
T  7154429 agatagatgaaaatcatatttttaatacatatttgatcatatattac 7154383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 23490021 - 23489977
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||    
T  23490021 ttactatcagtatttaagagttgtacaatgttgtgattaattcac 23489977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 773713 - 773752
Alignment:
Q  104 taccgtttttctttgtttttacagagtgaacaaaaatcac 143  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  773713 taccgtttttctctgttttaacagagtgaacaaaaatcac 773752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 14370805 - 14370845
Alignment:
Q  267 tatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    ||||||||  |||||||| ||||||||||||||||||||||    
T  14370805 tatcattaagtaagagttgtgcaatgttgtgattaattcac 14370845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 49583177 - 49583081
Alignment:
Q  277 taagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaacgcaac 373  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583177 taagacttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaacgcaac 49583081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 28146949 - 28147038
Alignment:
Q  177 cgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28146949 cgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattac 28147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 13198275 - 13198194
Alignment:
Q  185 acaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13198275 acaaaagacatagaatccggatattttttcaattgagatacatgaaaatcatattcttagtgcatatttgatcataaattac 13198194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 28146788 - 28146913
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||||||||| |||  ||||||| |||||||||||||||||||| ||||| ||| ||||||||||||   ||||||||||||||||||||||    
T  28146788 ggttttaaaaaacggtctgttacggagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgtttttcaccgtttttacagagtgaacaaaaa 28146887  T
Q  140 tcaccacgaaacaccgttacggctgc 165  Q
    |||| || ||||  |||||| |||||    
T  28146888 tcacgacaaaacgtcgttacagctgc 28146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 11440552 - 11440644
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||| |||||||||| ||||| | | || ||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  11440552 tgtcattcatgacaatagacacatagtccggataatttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattac 11440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 55606448 - 55606360
Alignment:
Q  178 gttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||| |||||| |||||   |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  55606448 gttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattac 55606360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 38412075 - 38411983
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| |||||   |||||| |||| ||||||||| |||||||||||||||||||||||| | |||| ||||| |||||||||    
T  38412075 tgtcgttcatgacaatagacaccaaatctgaatatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattac 38411983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 25967966 - 25968055
Alignment:
Q  179 ttcatgacaaaagacatagaatctggatatttt--ttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||| |||||||||||  |||||||||  ||||||||| |||||||| |||||||||||| || |||||||||| |||||||||    
T  25967966 ttcatgacaacagacatagaattcggatattttttttcaattgatatagatgataatcatatttttggtacatatttgataataaattac 25968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 55606298 - 55606242
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaacc 319  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  55606298 ttactatcattatttaagagttgtgcaatgttgtgattaattcacaatgcgacaacc 55606242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 25968119 - 25968178
Alignment:
Q  265 actatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||    
T  25968119 actatcattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaat 25968178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 11440394 - 11440495
Alignment:
Q  38 atggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccg-tttttctttgtttttacagagtgaacaa 136  Q
    |||||||||||||||||||| |||||||||||| ||||||  |||||||||||| |||| |||  ||| || |||||   |||||||||| |||||||||    
T  11440394 atggttttaaaaaacggtcttttatcgagaaaaaggccgcggcaaaaaggtataggtagtcgatattatcgattttttactgtttttacacagtgaacaa 11440493  T
Q  137 aa 138  Q
    ||    
T  11440494 aa 11440495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 13198132 - 13198071
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||| |||||| |||||||||| |||||||||||||||||||||| | ||||||| ||||||    
T  13198132 ttacgatcattgtttaagagttgtgcaatgttgtgattaattcacaccgcgacaatcacaat 13198071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 28147108 - 28147156
Alignment:
Q  271 attatttaagagttatgcaatgttgtgattaattcacgctgcgacaacc 319  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||||    
T  28147108 attatttaagagttgtgcaatgttgtgattaattcacaccgcgacaacc 28147156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 25967802 - 25967925
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttt----tacagagtgaaca 135  Q
    |||||||||| | ||||  ||| |||||| | ||| || ||||||||||||| ||||| |||||||||||||| |   |||||    |||||||||||||    
T  25967802 ggttttaaaatatggtccgttaccgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgttttccaccgtttttacatacagagtgaaca 25967901  T
Q  136 aaaatcaccacgaaacaccgttac 159  Q
    |||||||| ||||||  |||||||    
T  25967902 aaaatcacgacgaaatgccgttac 25967925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 38412226 - 38412119
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||| ||||  ||| |||||||| ||| || |||||||| |||| |||||||||||||||| ||  |   ||||| ||||||||||||||||    
T  38412226 ggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaag-tataggtagccgacgttaccggttacc---gttttcacagagtgaacaaaaa 38412131  T
Q  140 tcaccacgaaac 151  Q
    |||  |||||||    
T  38412130 tcaagacgaaac 38412119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 30839812 - 30839756
Alignment:
Q  103 ttaccgtttttctttgtttttacagagtgaacaaaaatcaccacgaaacaccgttac 159  Q
    |||| ||||||| | ||||||| |||||||||||||||||| | |||||||||||||    
T  30839812 ttactgtttttcatcgtttttatagagtgaacaaaaatcacgatgaaacaccgttac 30839756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 29866152 - 29866223
Alignment:
Q  275 tttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 346  Q
    ||||||| || |||||||||||||||||||||| |  |||||||||||||  | || |||||||| ||||||    
T  29866152 tttaagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaacgcaacatcagtaaca 29866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 55606597 - 55606488
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||| |||||||| |||  ||| |||||||| |||| | ||||||||||||| ||||  ||||||||||||||||         || |||||||||||||    
T  55606597 ggttctaaaaaacagtccgttaccgagaaaaaggcc-cgacaaaaaggtataggtagtggacgttaccgtttttc---------actgagtgaacaaaaa 55606508  T
Q  140 tcaccacgaaacaccgttac 159  Q
    |||| |||||||||||||||    
T  55606507 tcacgacgaaacaccgttac 55606488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 30839700 - 30839651
Alignment:
Q  194 atagaatctggatattttttcaattgagatagatgaaaatcatatttttag 244  Q
    |||||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  30839700 atagaatctgaatatttttt-aattgagacagataaaaatcatatttttag 30839651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 38411917 - 38411859
Alignment:
Q  266 ctatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||| ||||| |||| ||||||||||||||||||||||   ||||||||| ||||    
T  38411917 ctatcattgtttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaat 38411859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 11440693 - 11440746
Alignment:
Q  271 attatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    ||||||||||||||   |||||||||||||||||||| | |||||||| |||||    
T  11440693 attatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaat 11440746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 32617771 - 32617683
Alignment:
Q  178 gttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32617771 gttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattac 32617683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 40 - 267
Target Start/End: Original strand, 9457447 - 9457674
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||| |||   ||| |||| ||| |||||| ||||||||||||| | ||| |||||| |||||||||   |   || |||||||||||||||    
T  9457447 ggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaa 9457546  T
Q  140 tcaccacgaaacaccgttacggctgcnnnnnnnntgtcgttcatgacaaaagacatagaatctggatatttt-ttcaattgagatagatgaaaatcatat 238  Q
    |||| ||||||| ||||||| || ||        || |||||||||||| ||||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  9457547 tcacgacgaaacgccgttacagccgcaaaaaaa-tgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatat 9457645  T
Q  239 ttttagtgcatatttgatcataaattact 267  Q
    ||||  | ||||| |||||||||||||||    
T  9457646 ttttgatacatatctgatcataaattact 9457674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 40 - 267
Target Start/End: Original strand, 9461544 - 9461771
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||| |||   ||| |||| ||| |||||| ||||||||||||| | ||| |||||| |||||||||   |   || |||||||||||||||    
T  9461544 ggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaa 9461643  T
Q  140 tcaccacgaaacaccgttacggctgcnnnnnnnntgtcgttcatgacaaaagacatagaatctggatatttt-ttcaattgagatagatgaaaatcatat 238  Q
    |||| ||||||| ||||||| || ||        || |||||||||||| ||||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  9461644 tcacgacgaaacgccgttacagccgcaaaaaaa-tgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatat 9461742  T
Q  239 ttttagtgcatatttgatcataaattact 267  Q
    ||||  | ||||| |||||||||||||||    
T  9461743 ttttgatacatatctgatcataaattact 9461771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 34664742 - 34664833
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  34664742 tgtcgttcatgacaatagacatagaaattggatattgtttcaattgagatagatgaaaatcata-ttttagtacgtatttgatcataaattac 34664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 32617929 - 32617818
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||||||||  ||| |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||   ||||||| ||||||||||||||    
T  32617929 ggttttaaaaaacggtcggttaccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgtttttcaccgtttttatagagtgaacaaaaa 32617830  T
Q  140 tcaccacgaaac 151  Q
    | || |||||||    
T  32617829 ttacgacgaaac 32617818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 266
Target Start/End: Complemental strand, 24700059 - 24699910
Alignment:
Q  117 tgtttttacagagtgaacaaaaatcaccacgaaacaccgttacggctgcnnnnnnnntgtcgttcatgacaaaagacatagaatctggatattttttcaa 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||        ||||||   |||||| ||||  | || | ||||||||||||||    
T  24700059 tgtttttacagagtgaacaaaaatcacgacgaaacaccgttacggcggcaaaatagatgtcgtcattgacaatagacccaaaacccggatattttttcaa 24699960  T
Q  217 ttgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||||| |||||||| ||  ||||||||| ||| |||||    
T  24699959 ttgagatagatgaaaattatatttttcgtatatatttgataatatattac 24699910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 34664896 - 34664991
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcg 358  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||  | | |||||||||||| |  ||||||||||| ||||||| ||||||||||    
T  34664896 ttactatcattatttaaaagttgtgcaatgttgtaattaattcataccgtgacaaccacaatccataatgcaacatccgtaacaaccgaaattgcg 34664991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 12990300 - 12990370
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatatttttt-caattgagatagatgaaaatcatattttta 243  Q
    ||||||| ||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  12990300 tgtcgtttatgacaatagacatagaatctggatattttttgcagttgagatcgatgaaaatcatattttta 12990370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 14081893 - 14081826
Alignment:
Q  190 agacatagaatctggatatttttt-caattgagatagatgaaaatcatatttttagtgcatatttgat 256  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||||    
T  14081893 agacatagaatctggaaatttttttcaattgagatagatgaaaatcaaatttttagtatatatttgat 14081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 9457732 - 9457793
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | || |||||| ||||    
T  9457732 ttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 9457793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 9461829 - 9461890
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | || |||||| ||||    
T  9461829 ttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 9461890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 12990632 - 12990687
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaac 318  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||    
T  12990632 ttactatcattatttaagagttgtgcaatgttgtgactaattcacaccgcgacaac 12990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 12990144 - 12990270
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttcttt-gtttttacagagtgaacaaaa 138  Q
    ||||||||||||||||   ||| |||||||| ||| || | ||||||||||| ||||  |||||||||||||||     |||||||  ||||||||||||    
T  12990144 ggttttaaaaaacggttcgttaccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgttttttgaccgtttttatggagtgaacaaaa 12990243  T
Q  139 atcaccacgaaacaccgttacggctgc 165  Q
    ||||| |||||||| |||||| |||||    
T  12990244 atcacaacgaaacatcgttacagctgc 12990270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 14081757 - 14081707
Alignment:
Q  269 tcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaacc 319  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  14081757 tcattatttaaaagttatgcaatgttgtgattaatgcacactgcgacaacc 14081707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 32617622 - 32617561
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||| ||||||||||||| ||||||||||||||||||| || | ||||||||| ||||    
T  32617622 ttactatcgttatttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaat 32617561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 32296331 - 32296419
Alignment:
Q  178 gttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  32296331 gttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttac 32296419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 10117127 - 10117224
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagataga-----tgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| ||||| |||||| |||||||||| |||||||||||||     ||||||||||||||||||| ||||||||||||||||||||    
T  10117127 tgtcgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacatatttgatcataaattac 10117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 9177568 - 9177633
Alignment:
Q  190 agacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttga 255  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  9177568 agacatagaatccgaatattttttcaattgagattgatgaaaatcatatttttagtacatatttga 9177633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 8169268 - 8169199
Alignment:
Q  82 aaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaatcaccacgaaac 151  Q
    |||||||||| |||| |||||||||||||||||  | ||||||||||||||||||||||||| |||||||    
T  8169268 aaaaggtataggtagtcgacgttaccgtttttcactatttttacagagtgaacaaaaatcacgacgaaac 8169199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9177710 - 9177754
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  9177710 ttactatcattattcaagagttgtgcaatgttgtgattaattcac 9177754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 22509048 - 22509136
Alignment:
Q  177 cgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||  |||| ||||||  ||||||||  ||||| |||| ||||||||||| ||||||||| ||| ||||| ||||||||||    
T  22509048 cgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattac 22509136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 32296251 - 32296291
Alignment:
Q  118 gtttttacagagtgaacaaaaatcaccacgaaacaccgtta 158  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  32296251 gtttttacagagtgaacaaaaatcacgatgaaacaccgtta 32296291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 26660657 - 26660607
Alignment:
Q  274 atttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    ||||||||||| |||||||||||||||||||||| | | ||||||| ||||    
T  26660657 atttaagagttgtgcaatgttgtgattaattcacaccgtgacaaccgcaat 26660607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 26766628 - 26766578
Alignment:
Q  274 atttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    ||||||||||| |||||||||||||||||||||| | | ||||||| ||||    
T  26766628 atttaagagttgtgcaatgttgtgattaattcacaccgtgacaaccgcaat 26766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 47363907 - 47363817
Alignment:
Q  177 cgttcatgacaaaagacatagaatctggatattttttcaattgaga-tagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||    
T  47363907 cgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattac 47363817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 25636110 - 25636018
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| | ||| | |||| || ||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  25636110 tgtcgttcatgacaataaacacataatccgggtattttttcaattgaaatagatgaaaatcatatctttagtacatatttaatcataaattac 25636018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 10493610 - 10493524
Alignment:
Q  179 ttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||| |||| ||||| | ||| || ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  10493610 ttcataacaatagacacataatatgtatattttttcaattgagatggatgaaa-tcatatttttaatgcatatttgatcataaattac 10493524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 39653626 - 39653571
Alignment:
Q  211 tttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||    
T  39653626 tttcaattgaaatagatgaacatcatatttttagtacatatttgatcataaattac 39653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 33049114 - 33049171
Alignment:
Q  209 tttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||    
T  33049114 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattac 33049171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10493421 - 10493377
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  10493421 ttactatcattatttaagagttgtgcaatgttgtgattaattcac 10493377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 7493115 - 7493054
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| || ||||||||||||||||||| | | || |||||||||    
T  7493115 ttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgtgataaccacaat 7493054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 39653505 - 39653425
Alignment:
Q  266 ctatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 346  Q
    ||||||||||||||||||| || ||| ||||||||||||||| | || ||||||||||| |  || |||||||| ||||||    
T  39653505 ctatcattatttaagagttgtggaatattgtgattaattcacaccgcaacaaccacaatccataacgcaacatcggtaaca 39653425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 25635956 - 25635894
Alignment:
Q  262 attactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||| |||||||||||||||| | |||||||||||||||||||||| | || |||||| ||||    
T  25635956 attattatcattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 25635894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 31742876 - 31742933
Alignment:
Q  209 tttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||||| ||||||||||| ||||||| | ||||||||| |||| |||||    
T  31742876 tttttcaattgagatggatgaaaatcacatttttaatacatatttgaacatatattac 31742933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 33049251 - 33049340
Alignment:
Q  270 cattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcga 359  Q
    ||||||||||||||| ||||||||| |||||||||||| |  |||| |||||||| |  || ||  |||||||||||  |||||||||||    
T  33049251 cattatttaagagttgtgcaatgttttgattaattcacacctcgacgaccacaatccataacgcggcatctgtaacagccgaaattgcga 33049340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 47364030 - 47363960
Alignment:
Q  42 ttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgttttt 113  Q
    |||||||||||||||  ||| |||||||| |||| | ||||||| ||||| ||||| |||||||||||||||    
T  47364030 ttttaaaaaacggtccgttaccgagaaaaaggccaccacaaaaa-gtataggtagcggacgttaccgttttt 47363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 33048928 - 33048981
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataag 93  Q
    ||||||||||||||||||  || |||||||| |||||| |||||||| ||||||    
T  33048928 ggttttaaaaaacggtctggtaccgagaaaaaggccgcgacaaaaagatataag 33048981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 45435541 - 45435586
Alignment:
Q  262 attactatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    |||||||| |||||||||||||| |||||| |||| ||||||||||    
T  45435541 attactattattatttaagagttgtgcaatattgttattaattcac 45435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 25636241 - 25636161
Alignment:
Q  63 cgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaatcac 143  Q
    |||||||| |||||| ||||||||||||| ||||  || | ||| |||||||   |||| |||| ||||||||||||||||    
T  25636241 cgagaaaaaggccgcgacaaaaaggtataggtagatgatgctactgtttttcaccgtttctacatagtgaacaaaaatcac 25636161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 47363751 - 47363711
Alignment:
Q  267 tatcattatttaagagttatgcaatgttgtgattaattcac 307  Q
    ||||||||||||||| || ||||||||| ||||||||||||    
T  47363751 tatcattatttaagacttgtgcaatgttttgattaattcac 47363711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 16341619 - 16341534
Alignment:
Q  177 cgttcatgacaaaagacatagaatctggatatttttt--caattgagatagatgaaaatcatatttttagtgcatatttgatcata 260  Q
    |||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  16341619 cgttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaaaaacatatttttagtacatatttgatcata 16341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 39426292 - 39426203
Alignment:
Q  178 gttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatat-ttttagtgcatatttgatcataaattac 266  Q
    ||||||||||| ||||||||||||   |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39426292 gttcatgacaatagacatagaatccaaatattttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattac 39426203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 36491458 - 36491545
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataa 261  Q
    ||||||| |||||||  | |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  36491458 tgtcgtttatgacaattgtcatagaatatggatattttttcaattaagatagatgaaaatcatatttttagtacatatttaatcataa 36491545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 13424835 - 13424753
Alignment:
Q  181 catgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaat 263  Q
    |||||||  |||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||    
T  13424835 catgacagtagacatagaatccggatattttttcaattgaaataaatgaaaataatatttttagtacatatttgatcataaat 13424753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 22927270 - 22927204
Alignment:
Q  176 tcgttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatattttt 242  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  22927270 tcgttcatgacaatagacataaaatccggatattttttcaattgagatagatgaaaatcatattttt 22927204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 19967473 - 19967546
Alignment:
Q  178 gttcatgacaaaagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtgcatat 251  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  19967473 gttcacgacaacagacatagaatccggatattttttcaattgagatatatgaaaatcatatttttagtacatat 19967546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 19967308 - 19967432
Alignment:
Q  35 tccatggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaac 134  Q
    |||| ||||||||||||| |||  ||| |||||||| |||| |  |||||||||| | |||||||| |||||||||||||   |||||||||||||||||    
T  19967308 tccaaggttttaaaaaacagtccattaccgagaaaaaggccacggcaaaaaggtacaggtagccgaagttaccgtttttcaccgtttttacagagtgaac 19967407  T
Q  135 aaaaatcaccacgaaacaccgttac 159  Q
    ||||||| | | ||||| |||||||    
T  19967408 aaaaatctcgaggaaacgccgttac 19967432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 39426610 - 39426507
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    ||||||||||||| |||| ||| |||||||| ||||||||||||||||||| ||||||| | ||| | ||||||    ||||||||| |||||||||| |    
T  39426610 ggttttaaaaaacagtctgttaccgagaaaaaggccgcaacaaaaaggtattagtagccaatgttgctgttttttacagtttttacaaagtgaacaaaga 39426511  T
Q  140 tcac 143  Q
    ||||    
T  39426510 tcac 39426507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 41283295 - 41283398
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||||||||  |||   |||||| || ||  ||||||| ||||| ||||| ||||||||||||||||   ||||||||||||||||||||||    
T  41283295 ggttttaaaaaacggtccgttactaagaaaaaggtcgtgacaaaaaagtataggtagcggacgttaccgtttttcaccgtttttacagagtgaacaaaaa 41283394  T
Q  140 tcac 143  Q
    ||||    
T  41283395 tcac 41283398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 41283450 - 41283546
Alignment:
Q  174 tgtcgttcatgacaaaagacatagaatctggatatttttt-----caattgagatagatgaaaatcatatttttagtgcatatttgatcataaatta 265  Q
    ||||| ||||||||| ||||||| ||||  ||||||||||     |||||||||||||||||||||  ||||||||| || || |||||||||||||    
T  41283450 tgtcgctcatgacaatagacataaaatccagatattttttttcttcaattgagatagatgaaaatcccatttttagtacaaatctgatcataaatta 41283546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 13424685 - 13424630
Alignment:
Q  269 tcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||| |||||||||||||||||||||| |  ||||||| |||||    
T  13424685 tcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaactacaat 13424630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 22927116 - 22927061
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaac 318  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||  ||||||||    
T  22927116 ttactttcattatttaagagttgggcaatgttgtgattaattcacgtcgcgacaac 22927061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 36491304 - 36491415
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttttctttgtttttacagagtgaacaaaaa 139  Q
    |||||||||||| || || |||||| |||||   |||  |||| |||||||| |||||||| |||| |||||||    ||||||| ||||||||||||||    
T  36491304 ggttttaaaaaatgggctgttatcgggaaaaattccgtgacaataaggtataggtagccgatgttatcgttttttaccgtttttatagagtgaacaaaaa 36491403  T
Q  140 tcaccacgaaac 151  Q
    |||| |||||||    
T  36491404 tcacaacgaaac 36491415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 37247655 - 37247723
Alignment:
Q  286 tgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaat 354  Q
    |||| ||||||||||||||||| | ||||||||||||||  | || |||||||| |||||| |||||||    
T  37247655 tgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacgcaacatccgtaacactcgaaat 37247723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 20141914 - 20141843
Alignment:
Q  41 gttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgtttt 112  Q
    ||||||||||| || |  ||| ||||||||||| ||||||||||||||||| ||||||  | ||||||||||    
T  20141914 gttttaaaaaatggcccgttaacgagaaaatggacgcaacaaaaaggtatatgtagccacccttaccgtttt 20141843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 36491604 - 36491687
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 346  Q
    |||||||||| |||||||| || ||||||||| |||||||||||| | | |||||||  ||| || | ||||||||| ||||||    
T  36491604 ttactatcatcatttaagaattttgcaatgttatgattaattcacaccgtgacaaccgtaatccgtagtgcaacatccgtaaca 36491687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 27983562 - 27983524
Alignment:
Q  286 tgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  27983562 tgcaatgttgtgattaattcaccctgcgacgaccacaat 27983524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 20141720 - 20141663
Alignment:
Q  209 tttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||| |||| |||||||||||||| |||| | || |||||| ||||||||||    
T  20141720 tttttcaatttagatggatgaaaatcatatctttattacagatttgaacataaattac 20141663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 39426143 - 39426082
Alignment:
Q  262 attactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaa 323  Q
    |||||||||| ||| || ||||| ||||||||||| |||||||||| | |||||||| ||||    
T  39426143 attactatcaatatgtatgagttgtgcaatgttgtaattaattcacaccgcgacaactacaa 39426082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 41283608 - 41283665
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaacca 320  Q
    |||||||| ||||| || |||| |||||||||||||||||||||| |  |||||||||    
T  41283608 ttactatctttattcaaaagttgtgcaatgttgtgattaattcacaccacgacaacca 41283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 11783609 - 11783521
Alignment:
Q  179 ttcatgacaaaagacatagaatctggatatttttt-caattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||| ||| ||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11783609 ttcatggcaatagaaatagactccggatatttttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattac 11783521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 7299073 - 7299163
Alignment:
Q  177 cgttcatgacaaaagacatagaatctggatattttttcaattgagata-gatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||  ||| | | |||| |||||||||||||||||||||| |||||||| |||||||| ||| ||||||| ||||||||||||    
T  7299073 cgttcatgacactagagacaaaatccggatattttttcaattgagatacgatgaaaaccatattttaagtacatatttaatcataaattac 7299163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 11783458 - 11783397
Alignment:
Q  263 ttactatcattatttaagagttatgcaatgttgtgattaattcacgctgcgacaaccacaat 324  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||   ||||||||||||||    
T  11783458 ttactatcattatttaagagttgtgcaatgttgtaattacttcacaaagcgacaaccacaat 11783397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 7298927 - 7298999
Alignment:
Q  40 ggttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgttttt 113  Q
    |||||||||||||||||  ||| |||||||| |||||| ||||||| ||||  |||||||||||||||| ||||    
T  7298927 ggttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaa-gtatcggtagccgacgttaccgctttt 7298999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 21926593 - 21926549
Alignment:
Q  222 atagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  21926593 atagatgaaaatcatattttcagtacatatttaatcataaattac 21926549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 19596610 - 19596553
Alignment:
Q  209 tttttcaattgagatagatgaaaatcatatttttagtgcatatttgatcataaattac 266  Q
    ||||||||||||| | ||| ||||||||||||||||| || |||||| ||||| ||||    
T  19596610 tttttcaattgaggtggataaaaatcatatttttagtacaaatttgaacataagttac 19596553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 53527191 - 53527227
Alignment:
Q  271 attatttaagagttatgcaatgttgtgattaattcac 307  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  53527191 attatttaaaagttgtgcaatgttgtgattaattcac 53527227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 2165 - 2093
Alignment:
Q  41 gttttaaaaaacggtctcttatcgagaaaatggccgcaacaaaaaggtataagtagccgacgttaccgttttt 113  Q
    ||||||||||||||||| ||| |||||||| |||||| |||||||| ||    |||| |||||||||||||||    
T  2165 gttttaaaaaacggtctgttaccgagaaaaaggccgcgacaaaaagttaatgatagcggacgttaccgttttt 2093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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