View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9092_low_9 (Length: 319)
Name: NF9092_low_9
Description: NF9092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9092_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 5885780 - 5885484
Alignment:
| Q |
17 |
agtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgttacatgcatttaattatctaatgttannnnnnnctc |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5885780 |
agtagtcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgttacatgcatttaattatctaatgttatttttttctc |
5885681 |
T |
|
| Q |
117 |
aagagggtgtggatttcattttgtttgttaagtgatgcttgttgaagttcaataaaatacaatgtaatgtacgtttaggttcatttaatttacatgcatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5885680 |
aagagggtgtggatttcattttgtttgttaagtgatgctttttgaagttcaataaaatacaatgtaatgtacgtttaggttcacttaatttacatgcatg |
5885581 |
T |
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| Q |
217 |
catgtacgtttgtcacctaaaagtatctatttgcct----nnnnnnnactgagaaaagccgcataaaagacagaagtcgtacgtatacaaacaacac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885580 |
catgtacgtttgtcacctaaaagtatctatttgcctcccccccccccactgagaaaagccgcataaaagacagaagtcgtacgtatacaaacaacac |
5885484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 5841286 - 5841178
Alignment:
| Q |
144 |
ttaagtgatgcttgttgaagttcaataaaatacaatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaagtatc |
243 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5841286 |
ttaagtgatgtttgttgaagttcaataaaataccatgtaatgtacgtttatgttcatttaattgacatgcatgcatgtacgtttgtcacctaaaagtatc |
5841187 |
T |
|
| Q |
244 |
tatttgcct |
252 |
Q |
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| T |
5841186 |
tatttgcct |
5841178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 5847439 - 5847331
Alignment:
| Q |
144 |
ttaagtgatgcttgttgaagttcaataaaatacaatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaagtatc |
243 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5847439 |
ttaagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttaggttcatttaatttacatgtatgcatgtacgtttgtcacctaaaattatc |
5847340 |
T |
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| Q |
244 |
tatttgcct |
252 |
Q |
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||||||||| |
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| T |
5847339 |
tatttgcct |
5847331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 5847610 - 5847525
Alignment:
| Q |
17 |
agtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgttacatgcatttaattatctaat |
102 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
5847610 |
agtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttattttatttgttatatgcatttaattatctaat |
5847525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 5841456 - 5841374
Alignment:
| Q |
17 |
agtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgttacatgcatttaattatct |
99 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
5841456 |
agtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttattttatttgttatatgcatttaattatct |
5841374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 5848166 - 5848084
Alignment:
| Q |
17 |
agtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgttacatgcatttaattatct |
99 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
5848166 |
agtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttattttatttgttatatgcatttaattatct |
5848084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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