View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9095_high_2 (Length: 626)

Name: NF9095_high_2
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9095_high_2
NF9095_high_2
[»] chr3 (12 HSPs)
chr3 (18-527)||(33006653-33007169)
chr3 (244-354)||(25365465-25365580)
chr3 (304-354)||(52369778-52369828)
chr3 (304-352)||(21211293-21211341)
chr3 (303-349)||(7928458-7928504)
chr3 (303-349)||(8039840-8039886)
chr3 (303-349)||(17005624-17005670)
chr3 (267-352)||(24205005-24205095)
chr3 (304-352)||(12704663-12704711)
chr3 (303-351)||(20691325-20691373)
chr3 (306-358)||(25948895-25948947)
chr3 (311-351)||(27097072-27097112)
[»] chr4 (11 HSPs)
chr4 (304-352)||(24343512-24343560)
chr4 (244-309)||(18513176-18513241)
chr4 (300-351)||(14465296-14465347)
chr4 (304-351)||(19230315-19230362)
chr4 (306-352)||(20743286-20743332)
chr4 (306-352)||(32910556-32910602)
chr4 (299-349)||(40613458-40613508)
chr4 (303-349)||(54580028-54580074)
chr4 (305-350)||(31243555-31243600)
chr4 (303-351)||(7727964-7728012)
chr4 (305-349)||(14126118-14126162)
[»] chr5 (12 HSPs)
chr5 (304-351)||(5467984-5468031)
chr5 (303-349)||(28588679-28588725)
chr5 (304-364)||(18586295-18586354)
chr5 (304-354)||(18607103-18607153)
chr5 (304-374)||(25863187-25863257)
chr5 (303-349)||(36838551-36838597)
chr5 (311-349)||(40131629-40131667)
chr5 (304-349)||(23015995-23016040)
chr5 (303-351)||(2548393-2548441)
chr5 (303-351)||(24906306-24906354)
chr5 (313-349)||(27932243-27932279)
chr5 (313-349)||(43001808-43001844)
[»] chr7 (12 HSPs)
chr7 (306-352)||(5938477-5938523)
chr7 (303-350)||(15902829-15902876)
chr7 (304-351)||(18233604-18233651)
chr7 (306-349)||(30813820-30813863)
chr7 (303-349)||(21880160-21880206)
chr7 (303-349)||(27732244-27732290)
chr7 (303-349)||(27945049-27945095)
chr7 (304-349)||(11665446-11665491)
chr7 (305-349)||(18013081-18013125)
chr7 (304-348)||(19930947-19930991)
chr7 (304-352)||(23751905-23751953)
chr7 (304-352)||(43249998-43250046)
[»] chr6 (14 HSPs)
chr6 (306-351)||(7569176-7569221)
chr6 (311-349)||(1532248-1532286)
chr6 (540-582)||(32889074-32889116)
chr6 (300-349)||(17341666-17341715)
chr6 (304-352)||(12086351-12086399)
chr6 (304-352)||(34446570-34446618)
chr6 (303-349)||(7265598-7265644)
chr6 (303-349)||(7977835-7977881)
chr6 (303-349)||(9025499-9025545)
chr6 (309-413)||(7625066-7625170)
chr6 (304-352)||(12235525-12235573)
chr6 (313-349)||(12696332-12696368)
chr6 (305-349)||(19040360-19040404)
chr6 (301-349)||(30866147-30866195)
[»] chr8 (11 HSPs)
chr8 (303-349)||(11927091-11927137)
chr8 (305-349)||(3025559-3025603)
chr8 (266-352)||(30067991-30068082)
chr8 (311-349)||(7658471-7658509)
chr8 (303-349)||(11944673-11944719)
chr8 (311-349)||(13203649-13203687)
chr8 (304-349)||(34897093-34897138)
chr8 (313-349)||(7442853-7442889)
chr8 (297-349)||(8798830-8798882)
chr8 (297-349)||(27213555-27213607)
chr8 (304-352)||(44067521-44067569)
[»] chr1 (21 HSPs)
chr1 (303-349)||(36878469-36878515)
chr1 (313-414)||(37055871-37055971)
chr1 (305-349)||(398772-398816)
chr1 (304-352)||(22794084-22794132)
chr1 (304-351)||(24176373-24176420)
chr1 (305-352)||(40747780-40747827)
chr1 (303-349)||(1486714-1486760)
chr1 (303-349)||(1864885-1864931)
chr1 (303-349)||(6612176-6612222)
chr1 (303-349)||(9828052-9828098)
chr1 (311-349)||(28674808-28674846)
chr1 (299-349)||(31015051-31015101)
chr1 (304-350)||(39101188-39101234)
chr1 (320-349)||(2851029-2851058)
chr1 (304-349)||(8010293-8010338)
chr1 (306-351)||(17425101-17425146)
chr1 (304-349)||(18190114-18190159)
chr1 (296-349)||(34298444-34298497)
chr1 (305-349)||(7918218-7918262)
chr1 (305-349)||(17754319-17754363)
chr1 (303-347)||(44482240-44482284)
[»] chr2 (12 HSPs)
chr2 (311-383)||(23921227-23921299)
chr2 (303-358)||(34006996-34007051)
chr2 (303-349)||(12668428-12668474)
chr2 (303-349)||(34691810-34691856)
chr2 (303-349)||(34714222-34714268)
chr2 (303-349)||(42832281-42832327)
chr2 (312-349)||(28412358-28412395)
chr2 (306-354)||(12748687-12748735)
chr2 (307-351)||(19573984-19574028)
chr2 (313-349)||(21374714-21374750)
chr2 (305-349)||(27286299-27286343)
chr2 (313-349)||(39323272-39323308)
[»] scaffold0361 (1 HSPs)
scaffold0361 (244-349)||(14538-14645)
[»] scaffold0050 (1 HSPs)
scaffold0050 (303-349)||(70286-70332)
[»] scaffold0044 (1 HSPs)
scaffold0044 (303-348)||(53189-53234)
[»] scaffold1528 (1 HSPs)
scaffold1528 (305-349)||(1043-1087)
[»] scaffold0004 (1 HSPs)
scaffold0004 (313-349)||(92815-92851)


Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 33007169 - 33006653
Alignment:
Q  18 acaactgatcccaaagttcatatgtcttttcaggcaaaattcaaaataaaatatttcaattcagacccttaaatcattcacttattggcaaaataggccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007169 acaactgatcccaaagttcatatgtcttttcaggcaaaattcaaaataaaatatttcaattcagacccttaaatcattcacttattggcaaaataggccc 33007070  T
Q  118 tcaaattttaaatagaataacaatttagtccccgagttaacacacccctgttcctaagtcgagatgtttctatttgataccatgcttggtaccttctaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007069 tcaaattttaaatagaataacaatttagtccccgagttaacacacccctgttcctaagtcgagatgtttctatttgataccatgcttggtaccttctaaa 33006970  T
Q  218 aatcaatggctcaaggtccagattgt-------tatgaagcacatacatttcttagattaggcgtgtcatagtgtcggactcacgtcggtgtccgacacc 310  Q
    ||||||||| ||||||||||||||||       ||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||    
T  33006969 aatcaatgggtcaaggtccagattgtgacagtctatgaagcacatacattcctcagattagacgtgtcatagtgtcagactcacgtcggtgtccgacacc 33006870  T
Q  311 tataattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgtatcatgtctgatgttcgtatatgtgtccgtgcttca 410  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  33006869 tacgattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgtatcgtgtctgatgttcgtatatgtgtacgtgcttca 33006770  T
Q  411 tagacgacaatgatatttcaaattgaatttctccatgcagtccttcatattacccttagtattagtccatttcattgtaggcaaatatttatattcatat 510  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33006769 tagacgacagtgatatttcaaattgaatttctccatgcagtccttcatattacccttagtattagtccatttcattgtaggcaaatatttatattcatat 33006670  T
Q  511 aatctagattcaaaaca 527  Q
    | |||||||||||||||    
T  33006669 actctagattcaaaaca 33006653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 25365580 - 25365465
Alignment:
Q  244 tatgaagcacatacatttcttagattaggcgtgtcatagtgtcggactcacgtcggtgtccgacacc-----tataattaaactgaattatgtaatttta 338  Q
    ||||||||||||||||| || |||||||||||||| | |||||| || ||| ||||||||||||||      ||| |||| || ||||||||| || ||     
T  25365580 tatgaagcacatacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattc 25365481  T
Q  339 tcaaattattatccat 354  Q
    ||||||||||||||||    
T  25365480 tcaaattattatccat 25365465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 52369828 - 52369778
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatccat 354  Q
    |||||||||| |||| | |||||||||||||||| ||||||||||||||||    
T  52369828 cgacacctatgattacattgaattatgtaattttctcaaattattatccat 52369778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 21211341 - 21211293
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||||| ||||||| |||||| ||||||||||| ||||||||||||||    
T  21211341 cgacacccataattacactgaactatgtaattttctcaaattattatcc 21211293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 7928504 - 7928458
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  7928504 ccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 8039840 - 8039886
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||| ||||||| |||||||||||    
T  8039840 ccgacacatataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 17005624 - 17005670
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||| | |||||||||||||||||    
T  17005624 ccgacacttataattacactgaattatatgattttatcaaattatta 17005670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 24205005 - 24205095
Alignment:
Q  267 attaggcgtgtcatagtgtcggactcacgtcggtgtccgacacc-----tataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||||| | ||||||||| | |||| |||||||||||      |||||||| |||| ||||||| ||||| ||||||||||||||    
T  24205005 attaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattatcc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 12704663 - 12704711
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||| |||| | |||||||||| ||||| ||||||||||||||    
T  12704663 cgacacctatgattacattgaattatgtcattttttcaaattattatcc 12704711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 20691373 - 20691325
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||| ||| |||| |||||||||||| ||||| |||||||||||||    
T  20691373 ccgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 25948895 - 25948947
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatccatatcg 358  Q
    |||| |||||||| |||||||||||| ||||| ||||||||||| || |||||    
T  25948895 acacttataattacactgaattatgtgattttttcaaattattagccgtatcg 25948947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 27097072 - 27097112
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattattatc 351  Q
    |||||||||| |||||||||||||||| |||||||| ||||    
T  27097072 tataattaaattgaattatgtaattttctcaaattactatc 27097112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 24343560 - 24343512
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24343560 cgacacctataattacactgaattatgtaattttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 18513176 - 18513241
Alignment:
Q  244 tatgaagcacatacatttcttagattaggcgtgtcatagtgtcggactcacgtcggtgtccgacac 309  Q
    ||||||||||  ||| | || |||||||||||||| | ||||||||| ||||||||||||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacac 18513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 14465296 - 14465347
Alignment:
Q  300 tgtccgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    |||||||||| ||| |||||| |||||||||| ||||| |||||||||||||    
T  14465296 tgtccgacacatatgattaaattgaattatgtcattttctcaaattattatc 14465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 19230315 - 19230362
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||||||||||| | |||||||||| ||||| |||||||||||||    
T  19230315 cgacacctataattacattgaattatgttattttctcaaattattatc 19230362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 20743286 - 20743332
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 32910602 - 32910556
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||    
T  32910602 acacccataattacactgaattatgtcattttctcaaattattatcc 32910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 40613508 - 40613458
Alignment:
Q  299 gtgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||| |||||    
T  40613508 gtgtccgacacatataattacactgaattatgtgattttctcaaaatatta 40613458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 54580028 - 54580074
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  54580028 ccgacacttataattacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 31243555 - 31243600
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattattat 350  Q
    ||||||||| |||| |||||||||||| ||||| ||||||||||||    
T  31243555 gacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 7727964 - 7728012
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    |||||||||||||||| ||||||| |||| ||||| |||| ||||||||    
T  7727964 ccgacacctataattatactgaatcatgtcattttctcaacttattatc 7728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 14126118 - 14126162
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||||||| |||||||||||| | |||||||||||||||    
T  14126118 gacacttataattacactgaattatgtgactttatcaaattatta 14126162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 5467984 - 5468031
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  5467984 cgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 28588679 - 28588725
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||    
T  28588679 ccgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 18586295 - 18586354
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatccatatcgatatgt 364  Q
    ||||||||||||||| |||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  18586295 cgacacctataattacactgtattatgtcatttt-tcaaattattatccgtatcgacatgt 18586354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 18607103 - 18607153
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatccat 354  Q
    |||||||||| |||| | |||||||||| ||||| ||||||||||||||||    
T  18607103 cgacacctatgattacattgaattatgttattttctcaaattattatccat 18607153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 25863257 - 25863187
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgt 374  Q
    |||||| |||||||| |||||||||| | ||||| |||||||||||| ||| ||||  ||| |||||||||    
T  25863257 cgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtctgt 25863187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 36838597 - 36838551
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| ||| |||||||||||||| |||||||||||    
T  36838597 ccgacacatataattacactaaattatgtaattttctcaaattatta 36838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 40131667 - 40131629
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  40131667 tataattaaactgaattatgtgattttttcaaattatta 40131629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 23015995 - 23016040
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  23015995 cgacacctataattacactgaattatgtgattttctcaaatgatta 23016040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 2548441 - 2548393
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||| ||| |||| |||||||||||||||||| || ||||||||||    
T  2548441 ccgacacttatgattacactgaattatgtaattttctctaattattatc 2548393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 24906306 - 24906354
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||| | |||||| |||||||||||| ||||| |||||||||||||    
T  24906306 ccgacacttgtaattacactgaattatgtcattttttcaaattattatc 24906354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 27932279 - 27932243
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattatta 27932243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 43001844 - 43001808
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  43001844 taattacactgaattatgtaattttttcaaattatta 43001808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 5938523 - 5938477
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  5938523 acacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 15902876 - 15902829
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattat 350  Q
    ||||||| |||||||| ||| |||||||| ||||||||||||||||||    
T  15902876 ccgacacatataattacactaaattatgtgattttatcaaattattat 15902829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 18233604 - 18233651
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||||||||||| |||||||||||| ||||| |||||||| ||||    
T  18233604 cgacacctataattacactgaattatgtcattttctcaaattactatc 18233651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 30813863 - 30813820
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||| |||||||||||||||||| |||||||||||    
T  30813863 acacctgtaattacactgaattatgtaattttctcaaattatta 30813820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 21880206 - 21880160
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| | |||||| |||||||||||||||||| |||||||||||    
T  21880206 ccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 27732244 - 27732290
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||||||||| | |||||||||    
T  27732244 ccgacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 27945095 - 27945049
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| | |||||| |||||||||||||||||| |||||||||||    
T  27945095 ccgacacttgtaattacactgaattatgtaattttctcaaattatta 27945049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 11665446 - 11665491
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||| |||||||||||| ||||| |||||||||||    
T  11665446 cgacacttataattagactgaattatgtgattttttcaaattatta 11665491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 18013081 - 18013125
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||||||| |||||||||||||||||| | |||||||||    
T  18013081 gacacatataattacactgaattatgtaatttttttaaattatta 18013125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 19930947 - 19930991
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatt 348  Q
    |||||| |||||||| | |||||||||| ||||||||||||||||    
T  19930947 cgacacatataattacattgaattatgtcattttatcaaattatt 19930991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 23751953 - 23751905
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||| |||| ||| |||||| | ||||||||||||||||||||    
T  23751953 cgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 43250046 - 43249998
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||| |||||||| |||| ||||||| ||||| ||||||||||||||    
T  43250046 cgacacttataattacactgtattatgtcattttctcaaattattatcc 43249998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 7569176 - 7569221
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatc 7569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 1532286 - 1532248
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  1532286 tataattacactgaattatgtaattttatcaaattatta 1532248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 582
Target Start/End: Complemental strand, 32889116 - 32889074
Alignment:
Q  540 aacataacttataatcttaaaataacaaattgggaatagagaa 582  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  32889116 aacataacttataatcttaaaagaacaatttgggaatagagaa 32889074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 17341666 - 17341715
Alignment:
Q  300 tgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||||    
T  17341666 tgtctgacacttataattacactgaattatgtgattttatcaaattatta 17341715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 12086351 - 12086399
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  12086351 cgacacctatgattaaactgaattatgtcattatctcaaattattatcc 12086399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 34446618 - 34446570
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  34446618 cgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 7265598 - 7265644
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  7265598 ccgacacatataattacactgaattatgtgattttctcaaattatta 7265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 7977835 - 7977881
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| | |||||| |||||||||||||||||| |||||||||||    
T  7977835 ccgacacttgtaattacactgaattatgtaattttttcaaattatta 7977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 9025499 - 9025545
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  9025499 ccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 7625170 - 7625066
Alignment:
Q  309 cctataattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgtatcatgtctgatgttcgtatatgtgtccgtgctt 408  Q
    |||||||||| ||| |||||| | ||||| |||||||||||||| | ||||  ||| | ||||||| || |||| ||||| ||| | | |||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgtctatgtccgtgctt 7625071  T
Q  409 catag 413  Q
     ||||    
T  7625070 tatag 7625066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 12235525 - 12235573
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||| |||| |||||||||||| ||||| || |||||||||||    
T  12235525 cgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 12696368 - 12696332
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  12696368 taattacactgaattatgtaattttttcaaattatta 12696332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 19040404 - 19040360
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattatta 19040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 30866147 - 30866195
Alignment:
Q  301 gtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||| |||||||| | |||||||||| ||||| |||||||||||    
T  30866147 gtccgacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 11927091 - 11927137
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||    
T  11927091 ccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 3025603 - 3025559
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||    
T  3025603 gacacctataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 30067991 - 30068082
Alignment:
Q  266 gattaggcgtgtcatagtgtcggactcacgtcggtgtccgac-----acctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||||| |||||  |||||||||| ||||||||| ||||||     |||||  |||| |||||||||||| ||||| ||||||||||||||    
T  30067991 gattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcattttctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 7658509 - 7658471
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  7658509 tataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 11944719 - 11944673
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| ||||| |||||| |||||||||||||||||    
T  11944719 ccgacacatataattacactgagttatgtgattttatcaaattatta 11944673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 13203687 - 13203649
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  13203687 tataattacactgaattatgtaattttctcaaattatta 13203649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 34897138 - 34897093
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||| |||||||||||| ||||| |||||||||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattatta 34897093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 7442889 - 7442853
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||||| |||||||||    
T  7442889 taattacactgaattatgtaattttatgaaattatta 7442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 8798830 - 8798882
Alignment:
Q  297 cggtgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| ||||| |||||||| | |||||||||| ||||| |||||||||||    
T  8798830 cggtgtcggacacatataattatattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 27213607 - 27213555
Alignment:
Q  297 cggtgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||||||| |||||||| | |||||||||| ||||| | |||||||||    
T  27213607 cggtgtccgacacatataattacagtgaattatgtgattttctgaaattatta 27213555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 44067569 - 44067521
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||| |||||||| |||| ||||||| ||||| ||||||||||||||    
T  44067569 cgacacttataattacactgtattatgtcattttctcaaattattatcc 44067521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 36878515 - 36878469
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||    
T  36878515 ccgacacctataattacactgaattatgtgattttctcaaattatta 36878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 414
Target Start/End: Original strand, 37055871 - 37055971
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgtatcatgtctgatgttcgtatatgtgtccgtgcttcata 412  Q
    |||||| ||| |||||||||||||| ||||||||||| |  ||||||| | |   ||||||| ||||||| ||||||||| | ||| |||||||||||||    
T  37055871 taattacactaaattatgtaattttctcaaattattagcagtatcgatgtatcagtgtctgtgtcatgtccgatgttcgtgt-tgtatccgtgcttcata 37055969  T
Q  413 ga 414  Q
    ||    
T  37055970 ga 37055971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 398772 - 398816
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattatta 398816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 22794084 - 22794132
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    ||||||||||||||| |||| ||||||| ||||| ||||||||||||||    
T  22794084 cgacacctataattacactgtattatgtcattttttcaaattattatcc 22794132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 24176373 - 24176420
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  24176373 cgacacctataattacactgaatgatgttattttctcaaattattatc 24176420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 40747780 - 40747827
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattattatcc 352  Q
    |||||||||||||| | |||||||||| ||||| ||||||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatcc 40747827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 1486714 - 1486760
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  1486714 ccgacacttataattacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 1864885 - 1864931
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  1864885 ccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 6612176 - 6612222
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| | |||||| |||||||||||||||||| |||||||||||    
T  6612176 ccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 9828098 - 9828052
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||||    
T  9828098 ccgacacataaaattacactgaattatgtgattttatcaaattatta 9828052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 28674846 - 28674808
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  28674846 tataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 31015101 - 31015051
Alignment:
Q  299 gtgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||||||| | |||||| |||||||||||| ||||| |||||||||||    
T  31015101 gtgtccgacacttgtaattacactgaattatgtgattttctcaaattatta 31015051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 39101188 - 39101234
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattattat 350  Q
    ||||||||||||||| ||| |||||||| ||||| ||||||||||||    
T  39101188 cgacacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 2851058 - 2851029
Alignment:
Q  320 actgaattatgtaattttatcaaattatta 349  Q
    ||||||||||||||||||||||||||||||    
T  2851058 actgaattatgtaattttatcaaattatta 2851029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 8010293 - 8010338
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||| |||||||||| ||||||| |||||||||||    
T  8010293 cgacacttataattatactgaattatataattttttcaaattatta 8010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 17425101 - 17425146
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    |||| |||||||| | |||||||||| |||||||||||||||||||    
T  17425101 acacatataattacattgaattatgtgattttatcaaattattatc 17425146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 18190114 - 18190159
Alignment:
Q  304 cgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| | |||||| |||||||||||||||||| |||||||||||    
T  18190114 cgacacttgtaattacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 34298497 - 34298444
Alignment:
Q  296 tcggtgtccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||| || || |||||||| |||||||||||| ||||| |||||||||||    
T  34298497 tcggtgtcggatacgtataattacactgaattatgtgattttctcaaattatta 34298444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 7918218 - 7918262
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaattatta 7918262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 17754363 - 17754319
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||| ||| |||||||||||||||||| |||||||||||    
T  17754363 gacacatatagttacactgaattatgtaattttttcaaattatta 17754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 44482284 - 44482240
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattat 347  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||    
T  44482284 ccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 23921299 - 23921227
Alignment:
Q  311 tataattaaactgaattatgtaattttatcaaattattatccatatcgatatgttgatgtctgtatcatgtct 383  Q
    |||||||| |||||||||||||||||| ||||||||||| |  ||||||  |||  ||||||||||| |||||    
T  23921299 tataattacactgaattatgtaattttctcaaattattaacggtatcgacctgtcaatgtctgtatcgtgtct 23921227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 34006996 - 34007051
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattattatccatatcg 358  Q
    ||||||||||| |||| |||||||||||| | ||| ||||||||||||| ||||||    
T  34006996 ccgacacctatgattacactgaattatgtcaatttctcaaattattatctatatcg 34007051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 12668428 - 12668474
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  12668428 ccgacacttataattacactgaattatgtcattttttcaaattatta 12668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 34691810 - 34691856
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||| | |||||||||||||||||    
T  34691810 ccgacacatataattacactgaattatatgattttatcaaattatta 34691856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 34714222 - 34714268
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||| | |||||||||||||||||    
T  34714222 ccgacacatataattacactgaattatatgattttatcaaattatta 34714268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 42832281 - 42832327
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||| ||||||||||| |||||||||||    
T  42832281 ccgacacttataattacactgaaatatgtaattttctcaaattatta 42832327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 28412395 - 28412358
Alignment:
Q  312 ataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattatta 28412358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 12748735 - 12748687
Alignment:
Q  306 acacctataattaaactgaattatgtaattttatcaaattattatccat 354  Q
    |||||||| |||| |||||| ||||| ||||| ||||||||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattatccat 12748687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 19574028 - 19573984
Alignment:
Q  307 cacctataattaaactgaattatgtaattttatcaaattattatc 351  Q
    |||||||||||| |||||||||||| ||||| | |||||||||||    
T  19574028 cacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 21374714 - 21374750
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21374714 taattacactgaattatgtaattttttcaaattatta 21374750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 27286299 - 27286343
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||||||||||| ||| |||||||| || ||||||||||||||    
T  27286299 gacacctataattacacttaattatgtgatcttatcaaattatta 27286343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 39323308 - 39323272
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  39323308 taattacactgaattatgtaattttgtcaaattatta 39323272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 349
Target Start/End: Complemental strand, 14645 - 14538
Alignment:
Q  244 tatgaagcacatacatttcttagattaggcgtgtcatagtgtcggactcacgtcggtgtccgacacc---tataattaaactgaattatgtaattttatc 340  Q
    |||||||||| |||| | ||| |||||||||||||   ||||||||| |  |||| |||||||||||   | |||||| |||||||||||| ||||| ||    
T  14645 tatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcg-tgtccgacaccacttgtaattacactgaattatgtgattttttc 14547  T
Q  341 aaattatta 349  Q
    |||||||||    
T  14546 aaattatta 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 70332 - 70286
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||||| |||||||| |||||||||||| ||||| |||||||||||    
T  70332 ccgacacttataattacactgaattatgttattttttcaaattatta 70286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 53234 - 53189
Alignment:
Q  303 ccgacacctataattaaactgaattatgtaattttatcaaattatt 348  Q
    ||||||| |||||||| |||||||||||| ||||| ||||||||||    
T  53234 ccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 1087 - 1043
Alignment:
Q  305 gacacctataattaaactgaattatgtaattttatcaaattatta 349  Q
    ||||| |||| ||| |||||||||||||||||| |||||||||||    
T  1087 gacacatatagttacactgaattatgtaattttttcaaattatta 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 92851 - 92815
Alignment:
Q  313 taattaaactgaattatgtaattttatcaaattatta 349  Q
    |||||| |||||||||||||||||| |||||||||||    
T  92851 taattacactgaattatgtaattttctcaaattatta 92815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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