View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9095_high_3 (Length: 550)

Name: NF9095_high_3
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9095_high_3
NF9095_high_3
[»] chr5 (5 HSPs)
chr5 (3-533)||(9052842-9053369)
chr5 (101-151)||(37512601-37512651)
chr5 (399-445)||(42840527-42840573)
chr5 (101-145)||(27173761-27173805)
chr5 (101-145)||(42629944-42629988)
[»] chr8 (3 HSPs)
chr8 (385-449)||(15338159-15338223)
chr8 (385-449)||(15427224-15427288)
chr8 (385-449)||(15518528-15518592)
[»] scaffold0054 (1 HSPs)
scaffold0054 (98-145)||(40140-40187)
[»] chr6 (3 HSPs)
chr6 (97-148)||(32745203-32745254)
chr6 (101-145)||(25319622-25319666)
chr6 (101-145)||(26149315-26149359)
[»] chr1 (2 HSPs)
chr1 (101-146)||(22535506-22535551)
chr1 (101-145)||(361580-361624)


Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 533
Target Start/End: Original strand, 9052842 - 9053369
Alignment:
Q  3 ggtgggtagattattctaacttagaatacgaagagtgtgaagaacttggtatttcatggagtgatgcaccatggaaagatttatcttatgaatacttatg 102  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9052842 ggtgtgtaggttattttaacttagaatacgaagagtgtgaagaacttggtatttcatggagtgatgcgccatggaaagatttatcttatgaatacttatg 9052941  T
Q  103 ggagatatatagccttaaaagtaacacttggagaaaacttgatgttaattactctgcttgttcatgcttttctaacatcgctggtgtacgactatacacg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9052942 ggagatatatagccttaaaagtaacacttggagaaaacttgatgttaatgactctgcttgttcatgtttttctaacatcgctggtgtacgactatacacg 9053041  T
Q  203 aatgaaatgtgtcattggtggcaatatggtaaaaagtatgatggagtagaggtggaatcatttgacttgagaaatgaggtgttgtttacaacacttgtac 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9053042 aatgaaatgtgtcattggtggcaatatggtaaaaagtatgatggagtagaggtggaatcatttgacttgagaaatgaggtgttctttacaacacttgtac 9053141  T
Q  303 ccttaggcgatgatgtatattctaagtcgttatacatggtggggttaaatggcttcattgccttcatctcatggacctctggtaaaactatttttgacat 402  Q
    ||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  9053142 ccttaggc---gatgtatattctaagtcgttatacatggtggggttaaatggctccattgccttcatctcatggacctctggtacaactacttttgacat 9053238  T
Q  403 ttcaattttgtgtgaagttgaagtaaaagaatcatggactaaactatatagtattggaccattttcttccatcgagcatcctattcctatcggaacatgg 502  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9053239 ttcaattttgtgtgaaattggagtaaaagaatcatggactaaactatatagtattggaccattttcttgcatcgagcatcctattcctatcggaacatgg 9053338  T
Q  503 aagaatggttttgtatttttcaggaccaaag 533  Q
    |||||||||||||||||||||||||||||||    
T  9053339 aagaatggttttgtatttttcaggaccaaag 9053369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 37512601 - 37512651
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgatgttaat 151  Q
    ||||| ||||||||||| | ||| ||| |||||||||||||||||||||||    
T  37512601 tgggatatatatagcctaagaagcaactcttggagaaaacttgatgttaat 37512651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 42840573 - 42840527
Alignment:
Q  399 acatttcaattttgtgtgaagttgaagtaaaagaatcatggactaaa 445  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||||    
T  42840573 acatttcaattttgggtgaacttggtgtaaaagaatcatggactaaa 42840527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 27173805 - 27173761
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  27173805 tgggagatatacagcctaaaaagtaactcttggaggaaacttgat 27173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 42629988 - 42629944
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    |||||||||||| | |||||||| ||| |||||||||||||||||    
T  42629988 tgggagatatattgtcttaaaagcaactcttggagaaaacttgat 42629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 15338223 - 15338159
Alignment:
Q  385 taaaactatttttgacatttcaattttgtgtgaagttgaagtaaaagaatcatggactaaactat 449  Q
    ||||||||||||| |||| ||||||||| ||||| | |  || ||||||||||||||||||||||    
T  15338223 taaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactat 15338159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 15427288 - 15427224
Alignment:
Q  385 taaaactatttttgacatttcaattttgtgtgaagttgaagtaaaagaatcatggactaaactat 449  Q
    ||||||||||||| |||| ||||||||| ||||| | |  || ||||||||||||||||||||||    
T  15427288 taaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactat 15427224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 15518592 - 15518528
Alignment:
Q  385 taaaactatttttgacatttcaattttgtgtgaagttgaagtaaaagaatcatggactaaactat 449  Q
    ||||||||||||| |||| ||||||||| ||||| | |  || ||||||||||||||||||||||    
T  15518592 taaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactat 15518528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 40187 - 40140
Alignment:
Q  98 ttatgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    |||||||||||||||||||| | ||||||| | |||||||||||||||    
T  40187 ttatgggagatatatagcctaagaagtaactcgtggagaaaacttgat 40140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 32745254 - 32745203
Alignment:
Q  97 cttatgggagatatatagccttaaaagtaacacttggagaaaacttgatgtt 148  Q
    ||||||||||||||||||||| | ||||||| | ||||| ||||||||||||    
T  32745254 cttatgggagatatatagcctaagaagtaactcctggaggaaacttgatgtt 32745203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25319666 - 25319622
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    ||||||||||||||||| | ||||||| | |||||||||||||||    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgat 25319622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 26149359 - 26149315
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    ||||||||||||||||| | ||||||| | |||||||||||||||    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgat 26149315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 22535551 - 22535506
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgatg 146  Q
    ||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  22535551 tgggagatatacagccttagaagtaactcttggaggaaacttgatg 22535506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 361580 - 361624
Alignment:
Q  101 tgggagatatatagccttaaaagtaacacttggagaaaacttgat 145  Q
    ||||||||||||||||||||||||||    |||||||||||||||    
T  361580 tgggagatatatagccttaaaagtaatttctggagaaaacttgat 361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University