View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9095_high_7 (Length: 407)
Name: NF9095_high_7
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9095_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 43532880 - 43533260
Alignment:
| Q |
19 |
gcaccctcccttagcaactgtggcagcaattctatttggtggccaatagcggaatactgatctacctatgatattcttggctggcaggggacccctaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532880 |
gcaccctcccttagcaactgtggcagcaattctgtttggtggccaatagcgtaatactgatctacctatgatattcttggctggcaggggacccctaaga |
43532979 |
T |
|
| Q |
119 |
aaattgcatttaacattgtaaggaaataactcataagatgtaagaatagtgtacataatgcatat-----aattcaaacaaattttaccagacatgggag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43532980 |
aaattgcatttaacattgtaaggaaataactcataagatgtaagaatagtgtacataatgcatataatataattcaaacaaattttaccagacatgggag |
43533079 |
T |
|
| Q |
214 |
tcgtagctgttattgcggttgtctcccatcacaaaaacggagttctcaggaacacgctgcaaaagcaaataatattattaaactaaataaaaattcaact |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43533080 |
tcgtagctgttattgcggttgtctcccatcacaaaaacggagttctcaggaacacgctgcaaaagcaaataatattattaaactaaatacaaattcaact |
43533179 |
T |
|
| Q |
314 |
agttctgaacttttgtgcaatgacagaaacgatctgagctcaatgatcacgccttaaacacaatcaagcgcaagacaacac |
394 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43533180 |
agttctgaacttttgtgcaatgacaaaaacgatctgagctcaatgatcacgccttaaacacaatcaagcacaagacaacac |
43533260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University