View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9095_low_10 (Length: 453)
Name: NF9095_low_10
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9095_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 44651175 - 44651596
Alignment:
| Q |
14 |
cagagacaataaaataaatggaaaatgagataataattggttggtggttgtccttttctatggctgaagactgattgggaatgttaatcaattgcatgaa |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44651175 |
cagagaccataaaataaatggaaaatgagataataattggttggtggttgtccttttctatggctgaagactgattgggaatgttaatcaattgcatgaa |
44651274 |
T |
|
| Q |
114 |
ggaagcagccgttaggtcccaattttgaaagacttttgttctgtacactatcttagaaatcgattattattctcatgcaaatttcactaaccaagccttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44651275 |
ggaagcagccgttaggtcccaattttgaaagacttttgttctgtacactatattagaaatcgataattattctcatgcaaatttcactaaccaagccttt |
44651374 |
T |
|
| Q |
214 |
cagtaattttaaatagtgcatgtatatgttccactttatcattcccaagaatatgaagtgtttataaacaatttagtgcattatatattctacaaataat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44651375 |
cagtaattttaaatagtgcatgtatatgttccactttatcattcccgagaatatgaagtgtttataaacaatttagtgcattatatattctacaaataat |
44651474 |
T |
|
| Q |
314 |
gatctcctttgggtaaaaccattttttctcaatttttgtatatacctacggcaaaacaacaatcaaactgatatgatttatcaacaaaactgcataatat |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44651475 |
gatctcctttgggtaaaagcattttttctcaatttttgtatatacctaccgcaaaacaacaatcaaactgatatgatttatcaacaaaactgcataatat |
44651574 |
T |
|
| Q |
414 |
taataacatcatgatccatagt |
435 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44651575 |
taataacatcatgatccatagt |
44651596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University