View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9095_low_11 (Length: 441)
Name: NF9095_low_11
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9095_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 180 - 418
Target Start/End: Original strand, 17569156 - 17569395
Alignment:
| Q |
180 |
ttgagcggatgctgctctgctacagtggtgccatcttttcgctggcagtgtttctttttgttggggtctgtttagcatttaggggcttatctgttgatgt |
279 |
Q |
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| T |
17569156 |
ttgagcgaatgctgctctgctgttgtggtgcgttcttttcgatggcaatgtttctttttgttggggtctctttagcatttaggggtttatctgttgatgt |
17569255 |
T |
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| Q |
280 |
gttgttttggctagggtggggctgctgttgtgcctgtcaattggttttggggtta-caactaggctctttgtttcgttcttccttttaagagctgacaca |
378 |
Q |
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| T |
17569256 |
gttgttttggctcgggtggggctgctgttgtgcctgtcagttggttttgcggctagcagctaggctctttgttttgttcttctctttaagggctgttact |
17569355 |
T |
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| Q |
379 |
ttgcgtgttaaaggggtttcacatcactttgtaattttgt |
418 |
Q |
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| T |
17569356 |
ttgtgtgttaaaggggttttacctcactttgtaattttgt |
17569395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17569045 - 17569156
Alignment:
| Q |
8 |
ttggagttggagtttaagtaggttgaagattcctacatgtannnnnnn-cccgaatggagttgggatcctgcagattgtttgaatatggggtggggtgat |
106 |
Q |
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| T |
17569045 |
ttggagttggagtttaagtaggctgaagattcctacatgtattttttttcccgaatgaagttgggatcctgcagattgtttgaata-----tggggtgat |
17569139 |
T |
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| Q |
107 |
gtgcttctgctggtagt |
123 |
Q |
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| T |
17569140 |
gtgcttctgctggtagt |
17569156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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