View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9095_low_13 (Length: 435)
Name: NF9095_low_13
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9095_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 1477037 - 1477443
Alignment:
| Q |
16 |
agtttgaaccgtgaatccacttgagaaccaatttgttaaattctcacttaccaaaaccctttgatcacttgcacccaacaccgagaaagcaatcaaacat |
115 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1477037 |
agtttgaattgtgaatccacttgagtaccaatttgttaaattctcacttaccaaaaccctttgttcacttgcacccaacaccgagaaagcaatcaaacag |
1477136 |
T |
|
| Q |
116 |
aacacaaaagaaaaaaccctaatcaccaacaaagccacataccacttcacctctttcttggatttcaagaaattagtaattactacctcagtgtctccac |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1477137 |
aacacaaaagcaaaaaccctaatcaccaacaaagccacgtaccacttcacctctttcttggatttcaagaaattagtaattactacctcagtgtctccac |
1477236 |
T |
|
| Q |
216 |
ttgtgttcttaggatccatcatgttgatcttctcttccaagactttgagtacttcattgttatcttcttgtgtttgttcttttggttcatcttttgtatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1477237 |
ttgtgttcttaggatccatcatgttgatcttctcttccaagactttgagtacttcattgttatcttcttgtgtttgttcttttggttcatcttttgtatc |
1477336 |
T |
|
| Q |
316 |
ttgatctaagctttcaatgttaatagtactcataatgaaattttcacaatcaaaacctttgcaactaaaagaacaactagttgtagttttagcttccact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1477337 |
ttgatctaagctttcaatgttaatagtactcataatgaaattttcacaatcaaaacctttgcaactaaaagaacaactagttgtagttttagcttccact |
1477436 |
T |
|
| Q |
416 |
ttgagta |
422 |
Q |
| |
|
||||||| |
|
|
| T |
1477437 |
ttgagta |
1477443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University