View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9095_low_2 (Length: 825)

Name: NF9095_low_2
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9095_low_2
NF9095_low_2
[»] chr8 (1 HSPs)
chr8 (14-815)||(42236243-42237046)


Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 14 - 815
Target Start/End: Original strand, 42236243 - 42237046
Alignment:
Q  14 atcaagaggcagaaaggggaacagaatcatgaatcacatattagaagcgtcacaacacacctgatgcagattcaacaaggatgaagaatcacaaagtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236243 atcaagaggcagaaaggggaacagaatcatgaatcacatattagaagcgtcacaacacacctgatgcagattcaacaaggatgaagaatcacaaagtaaa 42236342  T
Q  114 gaagagcagaagcaggtatcgcgggctgaggcgtttatttcacatcatcatcaaggcacgccgactttcaatgaagggtttccgagattttgtttcaaaa 213  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42236343 gaagagcagaagcaggtatcccgggctgaggcgtttatttcacaccatcatcaaggcacgacgactttcaatgaagggtttccgagattttgtttcaaaa 42236442  T
Q  214 ccgcaactggtctccggttagggactggttatcccagnnnnnnnn--cttcaaattttagcagtttcggttgaccagcaggttttaaaggctacattggt 311  Q
    |||||||||||||| |||||||||| |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236443 ccgcaactggtctctggttagggacaggttatcccagttttttttttcttcaaattttagcagtttcggttgaccagcaggttttaaaggctacattggt 42236542  T
Q  312 tccggttgatcaggtttttaaaacattggtttatacttgaaaaatgttagaactaccaaaactactatcatcctaattttaaggaaaacgattttggtgt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  42236543 tccggttgatcaggtttttaaaacattggtttatacttgaaaaatgttaaaactaccaaaactgctatgatcctaattttaaggaaaacgattttggtgt 42236642  T
Q  412 tgtttgtatatgttgttattaacaaataacggttgcaaaagtaaacttgatcctttttaccatgcacacattagaacttgcaagaacagtaacaacaaga 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42236643 tgtttgtatatgttgttattaacaaataacggttgcaaaagtaaacttgatcctttttaccatgcacacattagaacttgcaagaacagtaacaagaaga 42236742  T
Q  512 tgaaataaacaggctcatcaaaatttatccactccgaataaaaaattgctttcaatattatccagaaaaagacaacagtacatctaaaagtcacaacaca 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236743 tgaaataaacaggctcatcaaaatttatccactccgaataaaaaattgctttcaatattatccagaaaaagacaacagtacatctaaaagtcacaacaca 42236842  T
Q  612 attaataaaacaattacccaagaacaagaggaaaaggagaaaacagaagcaagaaacaaatatcaggaaatcagggaagctcccaaattacatatccaaa 711  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236843 attaataaaacaattactcaagaacaagaggaaaaggagaaaacagaagcaagaaacaaatatcaggaaatcagggaagctcccaaattacatatccaaa 42236942  T
Q  712 gctatacaaagatatcctatgttacagaatgtgcattcaattcaatataatattaatagatgtgnnnnnnntatacgtggttaattaaattctaaacacc 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||    
T  42236943 gctatacaaagatatcctatgttacagaatgtgcattcaattcaatataatattaatagatgtgaaaaaaaaatacgtggttaattaaattctaaacccc 42237042  T
Q  812 aaac 815  Q
    ||||    
T  42237043 aaac 42237046  T

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