View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9095_low_20 (Length: 250)

Name: NF9095_low_20
Description: NF9095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9095_low_20
NF9095_low_20
[»] chr7 (44 HSPs)
chr7 (6-233)||(27362817-27363043)
chr7 (11-90)||(14623892-14623971)
chr7 (11-93)||(25089259-25089341)
chr7 (19-93)||(35365065-35365139)
chr7 (9-161)||(44549210-44549355)
chr7 (8-74)||(5096374-5096440)
chr7 (8-74)||(24052511-24052577)
chr7 (7-87)||(45634114-45634194)
chr7 (6-93)||(22779843-22779929)
chr7 (8-93)||(1079881-1079965)
chr7 (107-160)||(13703363-13703416)
chr7 (7-79)||(9059197-9059269)
chr7 (108-159)||(6547725-6547776)
chr7 (108-155)||(8145190-8145237)
chr7 (27-171)||(13703051-13703187)
chr7 (8-74)||(39753453-39753520)
chr7 (27-93)||(14240718-14240784)
chr7 (107-157)||(14625051-14625101)
chr7 (12-93)||(9334830-9334911)
chr7 (108-161)||(10039917-10039970)
chr7 (8-93)||(31309865-31309950)
chr7 (122-162)||(4406881-4406921)
chr7 (7-171)||(13640670-13640826)
chr7 (126-161)||(39599015-39599050)
chr7 (9-92)||(47118216-47118299)
chr7 (27-93)||(11485717-11485783)
chr7 (122-160)||(13640982-13641020)
chr7 (122-172)||(32358898-32358948)
chr7 (24-74)||(34863066-34863116)
chr7 (44-93)||(7809993-7810042)
chr7 (33-86)||(20561308-20561361)
chr7 (33-74)||(32675733-32675774)
chr7 (8-93)||(42181784-42181869)
chr7 (107-160)||(42851089-42851142)
chr7 (107-171)||(5318811-5318875)
chr7 (122-162)||(5483186-5483226)
chr7 (37-93)||(5789339-5789395)
chr7 (182-238)||(7806701-7806757)
chr7 (33-89)||(7814590-7814646)
chr7 (122-162)||(35910059-35910099)
chr7 (122-162)||(41343572-41343612)
chr7 (122-162)||(44652129-44652169)
chr7 (125-161)||(46452828-46452864)
chr7 (122-162)||(47840513-47840553)
[»] chr1 (34 HSPs)
chr1 (9-161)||(21967936-21968083)
chr1 (106-171)||(35056154-35056219)
chr1 (9-148)||(40368088-40368219)
chr1 (8-74)||(8028544-8028610)
chr1 (27-93)||(33129528-33129594)
chr1 (27-241)||(25788947-25789149)
chr1 (2-93)||(6012533-6012624)
chr1 (102-161)||(11080218-11080277)
chr1 (9-88)||(13187977-13188056)
chr1 (9-93)||(8050186-8050270)
chr1 (7-87)||(12471731-12471811)
chr1 (100-171)||(49840435-49840506)
chr1 (9-65)||(10164156-10164212)
chr1 (209-241)||(14978241-14978273)
chr1 (2-74)||(18314153-18314225)
chr1 (36-172)||(4353621-4353749)
chr1 (122-161)||(38190327-38190366)
chr1 (106-161)||(43115249-43115304)
chr1 (191-233)||(10385157-10385199)
chr1 (122-160)||(24612229-24612267)
chr1 (122-172)||(35112434-35112484)
chr1 (12-56)||(899079-899124)
chr1 (108-161)||(37033989-37034042)
chr1 (44-93)||(40287923-40287972)
chr1 (37-74)||(41103584-41103621)
chr1 (122-162)||(7308704-7308744)
chr1 (122-162)||(17248717-17248757)
chr1 (122-162)||(31638784-31638824)
chr1 (37-93)||(32432916-32432972)
chr1 (122-162)||(34078065-34078105)
chr1 (122-162)||(39879389-39879429)
chr1 (125-161)||(41953972-41954008)
chr1 (122-162)||(44065608-44065648)
chr1 (122-162)||(46040816-46040856)
[»] chr3 (37 HSPs)
chr3 (6-161)||(37681402-37681548)
chr3 (6-88)||(5846371-5846453)
chr3 (8-74)||(37980433-37980499)
chr3 (8-74)||(44176874-44176940)
chr3 (8-74)||(44183556-44183622)
chr3 (8-93)||(21301634-21301718)
chr3 (29-93)||(34804487-34804551)
chr3 (8-74)||(3806804-3806870)
chr3 (27-93)||(38373759-38373825)
chr3 (9-93)||(5349007-5349091)
chr3 (36-160)||(15039455-15039570)
chr3 (111-161)||(30333876-30333926)
chr3 (8-62)||(33706496-33706550)
chr3 (5-87)||(49757959-49758041)
chr3 (7-88)||(25441343-25441424)
chr3 (9-57)||(45648302-45648350)
chr3 (36-70)||(6417801-6417835)
chr3 (9-74)||(10613787-10613849)
chr3 (115-161)||(19226159-19226205)
chr3 (11-65)||(21301371-21301425)
chr3 (2-88)||(25440815-25440901)
chr3 (36-93)||(26976032-26976090)
chr3 (36-74)||(38358795-38358833)
chr3 (27-93)||(42885265-42885331)
chr3 (40-93)||(34796054-34796107)
chr3 (38-74)||(1148898-1148934)
chr3 (125-161)||(2445607-2445643)
chr3 (39-87)||(7137329-7137377)
chr3 (122-162)||(13336884-13336924)
chr3 (122-162)||(15496718-15496758)
chr3 (12-56)||(27398344-27398388)
chr3 (122-162)||(44762977-44763017)
chr3 (122-162)||(46090369-46090409)
chr3 (122-162)||(46851205-46851245)
chr3 (122-162)||(47670735-47670775)
chr3 (122-162)||(54113131-54113171)
chr3 (122-162)||(54203994-54204034)
[»] chr5 (27 HSPs)
chr5 (7-172)||(25537021-25537178)
chr5 (11-93)||(12095752-12095834)
chr5 (8-74)||(27263692-27263758)
chr5 (8-74)||(31172152-31172218)
chr5 (8-74)||(41879658-41879724)
chr5 (8-74)||(28394520-28394586)
chr5 (36-93)||(32008150-32008207)
chr5 (1-93)||(35726842-35726933)
chr5 (7-85)||(16273017-16273095)
chr5 (8-93)||(6239412-6239497)
chr5 (11-161)||(17705453-17705590)
chr5 (36-88)||(35395048-35395100)
chr5 (36-96)||(37896516-37896576)
chr5 (122-162)||(43396299-43396339)
chr5 (122-161)||(4353032-4353071)
chr5 (5-87)||(39585156-39585238)
chr5 (109-158)||(17822142-17822191)
chr5 (27-92)||(31659514-31659579)
chr5 (33-89)||(1584885-1584941)
chr5 (122-162)||(2529864-2529904)
chr5 (33-93)||(2530368-2530428)
chr5 (33-93)||(6752334-6752394)
chr5 (122-162)||(19361432-19361472)
chr5 (122-162)||(28746571-28746611)
chr5 (182-238)||(39178165-39178221)
chr5 (122-162)||(42112062-42112102)
chr5 (122-162)||(42416486-42416526)
[»] chr2 (33 HSPs)
chr2 (2-82)||(34196330-34196410)
chr2 (8-74)||(2383227-2383293)
chr2 (9-74)||(35096594-35096659)
chr2 (9-92)||(10643711-10643788)
chr2 (108-171)||(1071703-1071766)
chr2 (6-93)||(18295270-18295356)
chr2 (2-52)||(33954617-33954667)
chr2 (8-62)||(36213920-36213974)
chr2 (8-70)||(40324236-40324298)
chr2 (107-156)||(27591157-27591206)
chr2 (1-74)||(32217002-32217075)
chr2 (36-93)||(43990414-43990471)
chr2 (2-93)||(24549198-24549287)
chr2 (40-88)||(26195113-26195161)
chr2 (182-241)||(16568238-16568297)
chr2 (8-87)||(19133994-19134073)
chr2 (2-86)||(19317614-19317700)
chr2 (38-93)||(34118848-34118903)
chr2 (122-172)||(12599564-12599614)
chr2 (27-85)||(39544387-39544445)
chr2 (44-93)||(27058697-27058746)
chr2 (122-162)||(1117810-1117850)
chr2 (122-162)||(3079500-3079540)
chr2 (122-162)||(4631037-4631077)
chr2 (122-162)||(13552154-13552194)
chr2 (125-161)||(18612390-18612426)
chr2 (33-93)||(19000201-19000261)
chr2 (12-56)||(25915081-25915125)
chr2 (122-162)||(32292192-32292232)
chr2 (122-162)||(34912435-34912475)
chr2 (122-162)||(35423570-35423610)
chr2 (122-162)||(40202013-40202053)
chr2 (122-162)||(41452616-41452656)
[»] chr8 (36 HSPs)
chr8 (106-161)||(2442299-2442354)
chr8 (8-74)||(415315-415381)
chr8 (8-74)||(1658046-1658112)
chr8 (8-74)||(6335993-6336059)
chr8 (8-74)||(37402065-37402131)
chr8 (36-93)||(5934643-5934700)
chr8 (8-74)||(14031620-14031686)
chr8 (8-74)||(36802014-36802080)
chr8 (107-160)||(11876388-11876441)
chr8 (107-160)||(11891395-11891448)
chr8 (122-171)||(15172376-15172425)
chr8 (107-148)||(19341910-19341951)
chr8 (36-87)||(18887318-18887369)
chr8 (44-159)||(32554844-32554953)
chr8 (111-161)||(9183967-9184017)
chr8 (122-172)||(11420395-11420445)
chr8 (12-93)||(13766015-13766097)
chr8 (107-161)||(15899132-15899186)
chr8 (12-74)||(39429863-39429925)
chr8 (111-160)||(2442421-2442470)
chr8 (100-161)||(10867217-10867278)
chr8 (125-162)||(11578977-11579014)
chr8 (36-93)||(15898892-15898949)
chr8 (12-56)||(4430073-4430117)
chr8 (122-158)||(9014909-9014945)
chr8 (101-153)||(13755225-13755277)
chr8 (122-162)||(14449854-14449894)
chr8 (122-162)||(27877396-27877436)
chr8 (122-162)||(27914371-27914411)
chr8 (122-162)||(27960790-27960830)
chr8 (122-162)||(28017577-28017617)
chr8 (122-162)||(39486281-39486321)
chr8 (122-162)||(40048922-40048962)
chr8 (122-162)||(41526096-41526136)
chr8 (122-162)||(44654733-44654773)
chr8 (122-162)||(44908324-44908364)
[»] scaffold0035 (1 HSPs)
scaffold0035 (8-74)||(81963-82029)
[»] chr4 (42 HSPs)
chr4 (8-74)||(22160494-22160560)
chr4 (8-74)||(23316043-23316109)
chr4 (1-93)||(26492483-26492575)
chr4 (7-171)||(33997594-33997750)
chr4 (12-93)||(37013159-37013241)
chr4 (9-87)||(53450729-53450807)
chr4 (34-148)||(24911358-24911464)
chr4 (2-93)||(3083385-3083476)
chr4 (34-93)||(23424276-23424335)
chr4 (12-74)||(36196596-36196658)
chr4 (106-171)||(17271919-17271984)
chr4 (36-93)||(21038609-21038665)
chr4 (1-86)||(36694525-36694609)
chr4 (7-87)||(34410281-34410361)
chr4 (8-67)||(31106422-31106481)
chr4 (186-241)||(32639956-32640011)
chr4 (108-171)||(43096956-43097019)
chr4 (108-171)||(55109918-55109981)
chr4 (123-161)||(2766065-2766103)
chr4 (8-62)||(25921131-25921185)
chr4 (103-141)||(32820000-32820038)
chr4 (108-161)||(4379896-4379949)
chr4 (208-241)||(32820094-32820127)
chr4 (12-65)||(34461849-34461902)
chr4 (125-162)||(51187448-51187485)
chr4 (36-88)||(54183612-54183665)
chr4 (108-160)||(5105637-5105689)
chr4 (122-162)||(8150986-8151026)
chr4 (122-162)||(11180689-11180729)
chr4 (12-93)||(12214428-12214511)
chr4 (36-88)||(17616347-17616399)
chr4 (8-87)||(17942587-17942667)
chr4 (122-162)||(17976229-17976269)
chr4 (122-162)||(25881795-25881835)
chr4 (122-162)||(26097903-26097943)
chr4 (122-162)||(39651517-39651557)
chr4 (122-162)||(39657495-39657535)
chr4 (122-162)||(40951837-40951877)
chr4 (122-162)||(41144792-41144832)
chr4 (122-162)||(43117297-43117337)
chr4 (122-162)||(46250844-46250884)
chr4 (122-162)||(51153265-51153305)
[»] chr6 (22 HSPs)
chr6 (9-74)||(21236813-21236877)
chr6 (9-74)||(31383566-31383631)
chr6 (107-161)||(3533275-3533329)
chr6 (27-93)||(4996217-4996283)
chr6 (8-74)||(13846679-13846745)
chr6 (106-160)||(20603914-20603968)
chr6 (44-93)||(23259699-23259748)
chr6 (12-69)||(26306005-26306062)
chr6 (9-57)||(4118993-4119041)
chr6 (37-93)||(25342228-25342284)
chr6 (11-74)||(22793875-22793938)
chr6 (122-172)||(8866843-8866893)
chr6 (7-87)||(22793160-22793241)
chr6 (122-162)||(6018825-6018865)
chr6 (122-162)||(7540889-7540929)
chr6 (33-85)||(8479078-8479130)
chr6 (122-162)||(17505270-17505310)
chr6 (39-87)||(23659361-23659409)
chr6 (122-162)||(29042987-29043027)
chr6 (122-162)||(29976097-29976137)
chr6 (122-162)||(34207254-34207294)
chr6 (122-162)||(34247987-34248027)
[»] scaffold0013 (2 HSPs)
scaffold0013 (6-93)||(97249-97335)
scaffold0013 (122-158)||(97070-97106)
[»] scaffold0636 (2 HSPs)
scaffold0636 (8-93)||(1418-1503)
scaffold0636 (36-72)||(3224-3260)
[»] scaffold0244 (1 HSPs)
scaffold0244 (122-162)||(16926-16966)
[»] scaffold0008 (1 HSPs)
scaffold0008 (33-93)||(5809-5869)
[»] scaffold0003 (2 HSPs)
scaffold0003 (107-160)||(226355-226408)
scaffold0003 (122-162)||(228531-228571)
[»] scaffold0027 (1 HSPs)
scaffold0027 (122-162)||(138208-138248)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 27363043 - 27362817
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  27363043 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtatagatatttatggcttttaaattataatgaaagtacaaaa 27362944  T
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttatcnnnnnnngttaacatcagcaatgtaacattatt 205  Q
    ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||        |||||||||| |||| ||||||||||    
T  27362943 ccagcaaatcatgttaatctttttcaatcacaccgataatatatcaaatataatatccattcttat-attttttgttaacatcaacaatataacattatt 27362845  T
Q  206 acagaaaaatttatttaaaaatataatt 233  Q
    | |||||||||| |||||||||||||||    
T  27362844 aaagaaaaatttgtttaaaaatataatt 27362817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 14623892 - 14623971
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattat 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||| ||||  |||||| |||||||    
T  14623892 taaattataaacggtgttttatataaaattttgattttgattaaaattttaagtacaaacatttgcgactttcaaattat 14623971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 25089341 - 25089259
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||| |||| ||||| |||||||||||||| |||||||||| ||||||||||||||||  |||||| ||||| ||||    
T  25089341 taaattataagcggtattttatataaaattttgattatgattaaaattataagtataaatatttgagactttcaaattgtaac 25089259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 35365139 - 35365065
Alignment:
Q  19 aaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||| ||||| || |||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||    
T  35365139 aaacggtattttatatgaaattttgattttgattaaaattataagtacaaatatttgtgacttttaaattgtaac 35365065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 44549210 - 44549355
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaacca 108  Q
    |||||||||| ||| || ||||| || ||||||| |||||||||||||| ||||||||||||||||  ||||||  |||| ||||  ||   |||||       
T  44549210 tgtaaattatgaactgtattttatatgaaattttaattttgattaaaattataagtataaatatttgcgactttctaattgtaac--aaacccaaaa--- 44549304  T
Q  109 acaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
      |||||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  44549305 --aaatcatgtttatctttttcaataacatcaataatataacaaatataatat 44549355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5096374 - 5096440
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  5096374 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 5096440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 24052511 - 24052577
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  24052511 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 24052577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 45634114 - 45634194
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||||| |||||| ||||| || ||||||||||||||| |||||  ||||||| |||||||| ||||||| ||||    
T  45634114 cgtgtaaattatgaacggtattttatatgaaattttgattttgaataaaactataagtacaaatatttgtgactttcaaat 45634194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 22779843 - 22779929
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||| | ||||| || |||||||||||||||||||||| | || || |||||||| ||||||| ||||| ||||    
T  22779843 gcgtgtaaattataaacgat-ttttatattaaattttgattttgattaaaattacaaatacaaatatttgtgactttaaaattgtaac 22779929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1079965 - 1079881
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| |||||| ||| | || |||||||||||||||||||| | ||||||| |||||||| ||||||| ||||| ||||    
T  1079965 gtgtaaattatgaacggtattt-atattaaattttgattttgattaaatttataagtacaaatatttgtgactttcaaattgtaac 1079881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 13703416 - 13703363
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  13703416 caacaaatcatatttatctttttcaatgacaacaataatataacaaatataata 13703363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 9059197 - 9059269
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgac 79  Q
    |||||||||||| ||  || ||||| ||  ||||||||||||||||||||| |||||||| ||||||||||||    
T  9059197 cgtgtaaattatgaatagtattttatatggaattttgattttgattaaaatgataagtatcaatatttatgac 9059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 6547725 - 6547776
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataat 159  Q
    ||||||| || ||||||||||||||||||||||| |||||| ||||||||||    
T  6547725 aacaaattatattaatctttttcaatgacaccaacaatataacaaatataat 6547776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 8145237 - 8145190
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaata 155  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  8145237 aacaaatcatgtttatctttttcaatgacaccaacaatatagcaaata 8145190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 13703187 - 13703051
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctt 126  Q
    ||||| || |||||||||||||  ||||| | ||||||| |||||||| ||||||||||||| ||        |||||  ||||||| ||| || |||||    
T  13703187 ttttatatgaaattttgattttatttaaatttataagtacaaatatttgtgacttttaaattgta--------acaaactcaacaaaccatatttatctt 13703096  T
Q  127 tttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    || |||||||| ||||||| || ||||||||||||  ||||||||    
T  13703095 ttacaatgacaacaataatttaacaaatataatataaattcttat 13703051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 39753453 - 39753520
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgatt-aaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || ||||||||||||||||| ||||| ||||||| ||||||||    
T  39753453 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaaattataagtacaaatattt 39753520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 14240784 - 14240718
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| || |||||||||||||||||||||| ||||| | ||||||| |||||||| ||||| ||||    
T  14240784 ttttatatgaaattttgattttgattaaaattataagaacaaatattcatgactttcaaattgtaac 14240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 14625051 - 14625101
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatata 157  Q
    ||||||||||| ||||||||||||||||||| |||| ||||| ||||||||    
T  14625051 caacaaatcatattaatctttttcaatgacaacaattatataacaaatata 14625101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 9334911 - 9334830
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||| |||||||||||  || |||||||||||||||||||||  | || ||||||| ||| |  |||||||||||||||    
T  9334911 aaattatgaacggtgttttttatgaaattttgattttgattaaaactaaaaatataaatgtttgttgcttttaaattataac 9334830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 10039917 - 10039970
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||| || || |||||||||||||||||||| |||||| ||||||||||||    
T  10039917 aacaaattatatttatctttttcaatgacaccaacaatatagcaaatataatat 10039970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 31309950 - 31309865
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| || | |  |||| || |||| ||||||||||||||||| ||||||| |||||||| ||||||| ||||| ||||    
T  31309950 gtgtaaattatgaatgataatttatatgaaatattgattttgattaaaattataagtacaaatatttgtgactttcaaattgtaac 31309865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 4406921 - 4406881
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  4406921 atctttttcaatgacaccaacaatataacaaatataatatc 4406881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 13640826 - 13640670
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaac 106  Q
    ||||| |||||| ||| || ||||| || ||||||||| | || ||||||| ||||||| |||||||| ||||||  ||||| ||||        |||      
T  13640826 cgtgtgaattatgaactgtattttatatgaaattttgaatctgtttaaaattataagtacaaatatttgtgacttccaaattgtaac--------aaact 13640735  T
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||||| |||||| ||||||| |||| ||| ||||||| || ||||||||||||  ||||||||    
T  13640734 caacaaaccatgtttatcttttacaataacaacaataatttaacaaatataatataaattcttat 13640670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 39599015 - 39599050
Alignment:
Q  126 ttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39599015 ttttcaatgacaccaataatataacaaatataatat 39599050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 47118216 - 47118299
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataa 92  Q
    |||||||||| || ||| ||||  || ||||||||||||||||| |||  ||||||||| ||| || ||||||| |||||||||    
T  47118216 tgtaaattatgaaaggtattttttatgaaattttgattttgattcaaagtataagtatagataattgtgactttcaaattataa 47118299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 11485783 - 11485717
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| || ||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||| ||||    
T  11485783 ttttatatgaaattttgattttaattaaaattatgggtacaaatatttgtgacttttaaattgtaac 11485717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 13641020 - 13640982
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataata 160  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  13641020 atctttttcaatgacaacaataatataacaaatataata 13640982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 32358948 - 32358898
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    ||||||||||||||||| || |||||| ||||||||||||  |||||||||    
T  32358948 atctttttcaatgacacaaaaaatataccaaatataatataaattcttatc 32358898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 34863116 - 34863066
Alignment:
Q  24 gtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||| |||| | |||||||||||||||||  ||||||||||||||||    
T  34863116 gtgttttatataagagtttgattttgattaaaaatataagtataaatattt 34863066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 7809993 - 7810042
Alignment:
Q  44 attttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||| ||||||| |||||||| ||||||| ||||| ||||    
T  7809993 attttgattaaaattataagtacaaatatttgtgactttcaaattgtaac 7810042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 20561361 - 20561308
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaa 86  Q
    |||||||||||||||| |||||||| ||| ||||| ||| || |||||||||||    
T  20561361 ataaaattttgattttcattaaaattatatgtatagatacttgtgacttttaaa 20561308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 32675774 - 32675733
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||    
T  32675774 ataaaattttgattttgattaaaattatatgtatagatattt 32675733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 42181869 - 42181784
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| |||  | ||||| |||||||||| |||||  ||||||| |||| || |||||||| ||| ||||||||| ||||    
T  42181869 gtgtaaattatgaaccatattttatataaaatttttattttatttaaaatgataactacaaatatttgtgatttttaaattgtaac 42181784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 42851089 - 42851142
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||| ||| ||||| |||||||||| || |||||||||| |||||||||||    
T  42851089 caacaaaccatattaatttttttcaatggcaacaataatataacaaatataata 42851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 5318875 - 5318811
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    |||||||||||||| || |||| ||| |||||||| |||||| |||| |||||||  ||||||||    
T  5318875 caacaaatcatgtttattttttccaaagacaccaacaatataacaaacataatataaattcttat 5318811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5483186 - 5483226
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  5483186 atctttttcaatgacaccaacaatgtaacaaatataatatc 5483226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 5789395 - 5789339
Alignment:
Q  37 aattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||| |||||||| ||||||  ||| |||| ||||||| ||||||||||    
T  5789395 aattttgatttttattaaaattataagtgcaaacatttgtgactttcaaattataac 5789339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 7806757 - 7806701
Alignment:
Q  182 taacatcagcaatgtaacattattacagaaaaatttatttaaaaatataattagaat 238  Q
    ||||| || |||| ||||||| |||||  ||||||||||||||||||||| ||||||    
T  7806757 taacaccaacaatataacattgttacaacaaaatttatttaaaaatataactagaat 7806701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 7814646 - 7814590
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatta 89  Q
    ||||||||||||||||||||||||  |||| |||||||| || | ||||| ||||||    
T  7814646 ataaaattttgattttgattaaaagtataaatataaatacttgttactttcaaatta 7814590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 35910059 - 35910099
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  35910059 atctttttcaatgacaccaacaatgtaacaaatataatatc 35910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 41343612 - 41343572
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  41343612 atctttttcaatgacaccaacaatgtaacaaatataatatc 41343572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 44652169 - 44652129
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||| ||||||||||||| |||||| |||||||||||||    
T  44652169 atctttctcaatgacaccaacaatataacaaatataatatc 44652129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 46452864 - 46452828
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||||||||||||  |||||||||||    
T  46452864 tttttcaatgacaccaataatatagaaaatataatat 46452828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 47840513 - 47840553
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  47840513 atctttttcaatgacaccaacaatgtaacaaatataatatc 47840553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 21968083 - 21967936
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaacca 108  Q
    |||||||||||||| || ||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||  |||| ||||  || | ||||   |    
T  21968083 tgtaaattataaactgtattttatatgaaattttgattttgattaaaattataagtataaatatttacgactttctaattgtaac--aaatccaaa---a 21967989  T
Q  109 acaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    | |||||||||| || ||||||||| ||| ||||||||||  |||||||||||    
T  21967988 aaaaatcatgtttatttttttcaataacagcaataatataaaaaatataatat 21967936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 35056154 - 35056219
Alignment:
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  35056154 ccaacaaatcatgtttatctttttcaatgacaccaataatatatcaaatatgatataaattcttat 35056219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 40368219 - 40368088
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaacca 108  Q
    |||||||||| || ||||||||  || |||||||||||||||||||||  ||| ||||| || ||| ||||||| ||||||||        ||||| |||    
T  40368219 tgtaaattatgaaaggtgttttttatgaaattttgattttgattaaaagtataggtatagatgtttgtgactttcaaattata--------acaaaccca 40368128  T
Q  109 acaaatcatgttaatctttttcaatgacaccaataatata 148  Q
    ||||| |||||| |||||||||||||||||||| ||||||    
T  40368127 acaaaccatgtttatctttttcaatgacaccaacaatata 40368088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8028544 - 8028610
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  8028544 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 8028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 33129594 - 33129528
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||||||||| ||||    
T  33129594 ttttacataaaattttgatgttgataaaaattataagtataaatatttgtaacttttaaattgtaac 33129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 25789149 - 25788947
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctt 126  Q
    ||||| ||| ||||| ||||||||||||||| ||||| ||| || ||||||||||||||||| ||        | ||| ||||||||||||||| |||||    
T  25789149 ttttatatataatttagattttgattaaaattataagcatagatctttatgacttttaaattgta--------ataaatccaacaaatcatgtttatctt 25789058  T
Q  127 tttcaatgacaccaataatatatcaaatataatatccattcttatcnnnnnnngttaacatcagcaatgtaacattattacagaaaaatttatttaaaaa 226  Q
     || ||||||| |||||||||| |||||||||||   |||||| ||         ||||| || |||| ||||||||||||||||||| ||||| ||       
T  25789057 att-aatgacatcaataatataacaaatataatacaaattcttttcttttaa---taacaccaacaatataacattattacagaaaaaattattaaaggg 25788962  T
Q  227 tataattagaataat 241  Q
    |||||||||||||||    
T  25788961 tataattagaataat 25788947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 6012533 - 6012624
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| ||||||||||| |||| | ||||| || || |||| |||||||||||||| | ||||| |||||||| ||||||||||||| ||||    
T  6012533 taatgtgtgtaaattattaacgatattttatatgaattttttattttgattaaaattacaagtaaaaatatttgtgacttttaaattgtaac 6012624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 11080277 - 11080218
Alignment:
Q  102 aaaaccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||| ||| ||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  11080277 aaaatcaagaaaccatgtttatttttttcaatgacaccaataatatatcaaatataatat 11080218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 13187977 - 13188056
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    |||||||||| || ||| |||||| | |||||| ||||||||||||||| ||||||| |||||| ||||| |||||||||    
T  13187977 tgtaaattatgaatggtattttacgtgaaatttcgattttgattaaaattataagtacaaatatctatgatttttaaatt 13188056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 8050186 - 8050270
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||| |||||  | ||| || ||||||||||||| |||||||| ||||||| |||||||| | ||||||||||| ||||    
T  8050186 tgtaaattatgaacggcatattatatgaaattttgattttaattaaaattataagtacaaatatttgtaacttttaaattgtaac 8050270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 12471811 - 12471731
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||||| || ||| ||||| || ||||||||||||||| |||||  ||||||| |||||||| ||||||| ||||    
T  12471811 cgtgtaaattatgaatggtattttatatgaaattttgattttgactaaaactataagtacaaatatttgtgactttcaaat 12471731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 49840435 - 49840506
Alignment:
Q  100 acaaaaccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||| |||||||| | | || ||| |||| |||||||||||||||||| |||||||||||| |||||||||    
T  49840435 acaaacccaacaaaccttctttatcctttttaatgacaccaataatataacaaatataatatacattcttat 49840506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 10164156 - 10164212
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagta 65  Q
    ||||||||||||| ||| ||||  || |||||||||||||||||||||| |||||||    
T  10164156 tgtaaattataaatggtattttgtatgaaattttgattttgattaaaattataagta 10164212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 14978273 - 14978241
Alignment:
Q  209 gaaaaatttatttaaaaatataattagaataat 241  Q
    |||||||||||||||||||||||||||||||||    
T  14978273 gaaaaatttatttaaaaatataattagaataat 14978241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 18314225 - 18314153
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||| ||||||||||||||| | | ||||  || |||||||||||||||||||||| ||||| | ||||||||    
T  18314225 taatacgtgtaaattataaatgatattttgtatgaaattttgattttgattaaaattataagcacaaatattt 18314153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 4353621 - 4353749
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctttttcaatga 135  Q
    ||||||| ||||| |||||||| ||| |||||||||||| ||||||| |||| |||        ||||| | |||||||||||||  ||||||||||| |    
T  4353621 aaattttaatttttattaaaattatatgtataaatatttgtgactttcaaatcata--------acaaaccaaacaaatcatgtttttctttttcaataa 4353712  T
Q  136 caccaataatatatcaaatataatatccattcttatc 172  Q
    ||  || |||||| ||||||| ||||  |||||||||    
T  4353713 caaaaacaatatagcaaatatgatattaattcttatc 4353749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 38190327 - 38190366
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  38190327 atctttttcaatgacacaaataatatagcaaatataatat 38190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 43115304 - 43115249
Alignment:
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||| ||||| |||||||| |||||||||||| ||||  ||||||||||||    
T  43115304 ccaacaaattatgtttatcttttttaatgacaccaatgatattgcaaatataatat 43115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 10385199 - 10385157
Alignment:
Q  191 caatgtaacattattacagaaaaatttatttaaaaatataatt 233  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  10385199 caatataacattattatagaaaaatttatttgaaaatataatt 10385157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 24612229 - 24612267
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  24612229 atctttttcaatgacacaaataatatagcaaatataata 24612267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 35112484 - 35112434
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    |||||||||||| |||| ||||||||| ||||||||||||  |||||||||    
T  35112484 atctttttcaataacactaataatatagcaaatataatataaattcttatc 35112434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 899124 - 899079
Alignment:
Q  12 aaattataaacggtgttttaca-taaaattttgattttgattaaaa 56  Q
    |||||||||||||||||||  | |||||||||||||||||||||||    
T  899124 aaattataaacggtgttttctaataaaattttgattttgattaaaa 899079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 37034042 - 37033989
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||  | || |||||||||||||| |||||||||||||||| |||||    
T  37034042 aacaaatcatacttatatttttcaatgacacaaataatatatcaaataaaatat 37033989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 40287923 - 40287972
Alignment:
Q  44 attttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||| |||| || |||||||||||||||| ||||| ||||    
T  40287923 attttgattaaaattataaataaaaatatttatgactttcaaattgtaac 40287972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 41103621 - 41103584
Alignment:
Q  37 aattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  41103621 aattttgattttgattaaaattataggtataaatattt 41103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 7308744 - 7308704
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  7308744 atctttttcaatgacaccaacaatgtaacaaatataatatc 7308704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 17248717 - 17248757
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  17248717 atctttttcaatgacaccaacaatgtaacaaatataatatc 17248757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 31638824 - 31638784
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  31638824 atctttttcaatgacaccaacaatgtaacaaatataatatc 31638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 32432972 - 32432916
Alignment:
Q  37 aattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||| |||||||| |||| ||||||| ||| ||  ||||||||||||||    
T  32432972 aattttgattttaattaaaattataaatataaatgtttgtggtttttaaattataac 32432916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 34078065 - 34078105
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  34078065 atctttttcaatgacaccaacaatgtaacaaatataatatc 34078105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 39879429 - 39879389
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  39879429 atctttttcaatgacaccaacaatgtaacaaatataatatc 39879389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 41953972 - 41954008
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  41953972 tttttcaatgacaccaacaatatgtcaaatataatat 41954008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 44065648 - 44065608
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  44065648 atctttttcaatgacaccaacaatgtaacaaatataatatc 44065608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 46040856 - 46040816
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  46040856 atctttttcaatgacaccaacaatgtaacaaatataatatc 46040816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 37681548 - 37681402
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaa 105  Q
    |||||||||||||||||||| ||||| || |||||| || |||||||||||| ||||||| |||||||| ||||||| ||||| ||        |||||     
T  37681548 gcgtgtaaattataaacggtattttatatgaaattt-gactttgattaaaattataagtacaaatatttgtgactttcaaattgta--------acaaac 37681458  T
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||| |||||||||| |||||||||||| ||| ||||||| || ||||||||||||    
T  37681457 ccaaaaaatcatgtttatctttttcaataacaacaataatttaacaaatataatat 37681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 5846453 - 5846371
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    ||||||||||||| || ||| ||||| || |||||||||||||||||||||| | |||||||||||||| ||||||| |||||    
T  5846453 gcgtgtaaattatgaatggtattttatatgaaattttgattttgattaaaattacaagtataaatatttgtgactttcaaatt 5846371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 37980499 - 37980433
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  37980499 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 37980433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 44176874 - 44176940
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  44176874 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 44176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 44183556 - 44183622
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  44183556 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 44183622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 21301634 - 21301718
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||| | || ||||||||||||| ||||    
T  21301634 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaa-aattgtgacttttaaattgtaac 21301718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 34804551 - 34804487
Alignment:
Q  29 ttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||||||||||||  |||||||| |||||| ||||||| ||||| ||||    
T  34804551 ttacataaaattttgattttgattaaaattgtaagtatagatatttgtgactttcaaattgtaac 34804487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 3806870 - 3806804
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||| | ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  3806870 gtgtaaattatgaacgatattttatatgaaattttgattttgattaaaattataagtacaaatattt 3806804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 38373759 - 38373825
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| ||||| |||| |||||||||||||| ||||||||||||||||| |||||| ||||| ||||    
T  38373759 ttttatataaattttttattttgattaaaattataagtataaatatttacgactttcaaattgtaac 38373825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 5349091 - 5349007
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||| |||| | ||||| ||  |||||||||||||||||||||  |||||||  |||||| ||||||||||||| ||||    
T  5349091 tgtaaattatgaacgatattttatatgtaattttgattttgattaaaattttaagtattgatatttttgacttttaaattgtaac 5349007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 15039570 - 15039455
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctttttcaatga 135  Q
    |||||||||||||||||||||| || |||||| ||||| |||||||| |||||  |||        | | |||| |||||||||| |||||||||| | |    
T  15039570 aaattttgattttgattaaaattattagtatatatatt-atgactttgaaattgcaac--------acacccaataaatcatgtttatctttttcagtaa 15039480  T
Q  136 caccaataatatatcaaatataata 160  Q
    ||||||||||||| |||||||||||    
T  15039479 caccaataatatagcaaatataata 15039455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 30333876 - 30333926
Alignment:
Q  111 aaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||| |||||||||||||||||||| |||| | ||||||||||||    
T  30333876 aaatcatgtttatctttttcaatgacaccaacaatacaacaaatataatat 30333926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 33706496 - 33706550
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataa 62  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||    
T  33706496 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataa 33706550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 49757959 - 49758041
Alignment:
Q  5 tgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||||||||| ||||| |  |||| ||||| ||||||| | ||||||||| |||||||||| ||||| ||||||| ||||    
T  49757959 tgcgtgtaaattacaaacgataatttatataaatttttgatatagattaaaattataagtataagtatttgtgactttcaaat 49758041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 25441343 - 25441424
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    ||||| |||||| | |||| ||||| || |||||||||||||||||||||| ||||| | |||||||| ||| ||| |||||    
T  25441343 cgtgttaattatgatcggtattttatatgaaattttgattttgattaaaattataaggaaaaatatttgtgattttcaaatt 25441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 45648350 - 45648302
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaat 57  Q
    |||||||||| |||||| ||||| || ||||||||||||||||||||||    
T  45648350 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaat 45648302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 6417835 - 6417801
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaat 70  Q
    |||||||||||||||||||||| ||||||||||||    
T  6417835 aaattttgattttgattaaaattataagtataaat 6417801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 10613787 - 10613849
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||| ||| || |||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  10613787 tgtaaattatgaactgtatttta--taaaattttgattttgatt-aaattataagtataaatattt 10613849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 19226205 - 19226159
Alignment:
Q  115 catgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||| |||||||||||||||| ||||||| || ||||||||||||    
T  19226205 catgtttatctttttcaatgacaacaataatttaacaaatataatat 19226159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 21301371 - 21301425
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagta 65  Q
    |||||||| |||| | ||||| || ||||||||||||| ||||||||||||||||    
T  21301371 taaattatgaacgatattttatatgaaattttgattttaattaaaatcataagta 21301425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 25440815 - 25440901
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    |||| ||||| |||||| | |||| ||||| || ||||||| |||||||||||||| ||||| | |||||||| ||| ||| |||||    
T  25440815 taatacgtgttaattatgaccggtattttatatgaaattttaattttgattaaaattataaggaaaaatatttgtgattttcaaatt 25440901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 26976032 - 26976090
Alignment:
Q  36 aaattttgattttgatt-aaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||| ||||| ||||||| || ||||| ||||||| ||||||||||    
T  26976032 aaattttgattttgattaaaaattataagtagaactatttgtgactttcaaattataac 26976090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 38358833 - 38358795
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  38358833 aaattttgattttgattaaaattataaatataaatattt 38358795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 42885265 - 42885331
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| || ||||||||||||| |||||||| | ||||  |||||||| ||||||||||||| ||||    
T  42885265 ttttatatgaaattttgattttaattaaaattacaagttcaaatatttgtgacttttaaattgtaac 42885331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 34796054 - 34796107
Alignment:
Q  40 tttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||||  || ||||| |||||||||| ||||||||| ||||    
T  34796054 tttgattttgattaaaattttatgtatagatatttatgaattttaaattgtaac 34796107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 1148934 - 1148898
Alignment:
Q  38 attttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  1148934 attttgattttgattaaaattataagtatagatattt 1148898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 2445607 - 2445643
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  2445607 tttttgaatgacaccaacaatatatcaaatataatat 2445643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 7137329 - 7137377
Alignment:
Q  39 ttttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||| | ||||||||| ||||||||| |||||||||||||| ||||    
T  7137329 ttttgatatagattaaaattataagtatagatatttatgactttcaaat 7137377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 13336884 - 13336924
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  13336884 atctttttcaatgacaccaacaatgtaacaaatataatatc 13336924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 15496758 - 15496718
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  15496758 atctttttcaatgacaccaacaatgtaacaaatataatatc 15496718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 27398388 - 27398344
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaa 56  Q
    ||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  27398388 aaattatgaactgtgtttttcatgaaattttgattttgattaaaa 27398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 44763017 - 44762977
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  44763017 atctttttcaatgacaccaacaatgtaacaaatataatatc 44762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 46090409 - 46090369
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  46090409 atctttttcaatgacaccaacaatgtaacaaatataatatc 46090369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 46851245 - 46851205
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  46851245 atctttttcaatgacaccaacaatgtaacaaatataatatc 46851205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 47670775 - 47670735
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| |||||| ||||| |||||||    
T  47670775 atctttttcaatgacaccaacaatataacaaatttaatatc 47670735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 54113131 - 54113171
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  54113131 atctttttcaatgacaccaacaatgtaacaaatataatatc 54113171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 54204034 - 54203994
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  54204034 atctttttcaatgacaccaacaatctaacaaatataatatc 54203994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 25537178 - 25537021
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaac 106  Q
    |||||||||||| |||  | ||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||| ||||| ||        ||||| |    
T  25537178 cgtgtaaattatgaacaatattttatataaaaatttgattttgattaaaattataagtacaaatatttgtgactttcaaattgta--------acaaacc 25537087  T
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    ||| ||| |||||| |||||||||| | ||| ||||||| || |||||||||| |  |||||||||    
T  25537086 caaaaaaccatgtttatctttttcagtaacaacaataatttaacaaatataatgtaaattcttatc 25537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 12095752 - 12095834
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||| ||||| ||||||| || |||||||||||||| ||||||| |||||||| | ||||| ||||| ||||    
T  12095752 taaattataaacggtattttatataaaatatttattttgattaaaattataagtacaaatatttgtaactttcaaattgtaac 12095834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 27263692 - 27263758
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  27263692 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 27263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 31172152 - 31172218
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  31172152 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 31172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41879658 - 41879724
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  41879658 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 41879724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 28394520 - 28394586
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || ||||||||||||||| |||||| ||||||| ||||||||    
T  28394520 gtgtaaattatgaacggtattttatatgaaattttgattttgactaaaattataagtacaaatattt 28394586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 32008207 - 32008150
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||| ||||||||||    
T  32008207 aaattttgattttgattaaaattatatgtataaatttttgtgactttcaaattataac 32008150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35726933 - 35726842
Alignment:
Q  1 ttaatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||| |||||||||| || | |||| ||||| |||||||| |||||||||||||||| | ||||| |||||| ||||||||| ||||| ||||    
T  35726933 ttaacgcgtgtaaat-atgatcggtattttatataaaattatgattttgattaaaattacaagtacaaatatctatgactttcaaattgtaac 35726842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 16273017 - 16273095
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaa 85  Q
    ||||||||||||||||  ||| ||  || |||||||||||||||||||||| ||| | ||| |||||| ||||||||||    
T  16273017 cgtgtaaattataaacaatgtcttttatgaaattttgattttgattaaaattatatgcatagatatttttgacttttaa 16273095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 6239412 - 6239497
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| |||||| |||||  | ||||||| |||||| ||||||| ||||||| ||||| || |||| || ||||||||||    
T  6239412 gtgtaaattatgaacggtattttatgtgaaattttaattttgtttaaaattataagtacaaatagttgtgaccttcaaattataac 6239497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 17705590 - 17705453
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaac 110  Q
    |||||||||||| |||||||| ||||||||||||||      |||||  |||||| |||||||| ||||||| ||||||||||  || | | |||         
T  17705590 taaattataaacagtgttttatataaaattttgatt------aaaattttaagtacaaatatttgtgactttcaaattataac--aaatccgaaa----- 17705504  T
Q  111 aaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||| |||||||||||| |||  |||||| || ||||||||||||    
T  17705503 aaatcatgtttatctttttcaataacaagaataatttaacaaatataatat 17705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 35395048 - 35395100
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    |||||||||||||||||||||| | ||||| |||||||| ||||||| |||||    
T  35395048 aaattttgattttgattaaaattaaaagtacaaatatttgtgactttcaaatt 35395100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 37896576 - 37896516
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaa 96  Q
    |||||||||||||||||||||  |||| ||||||| ||| |  ||||||||||||||||||    
T  37896576 aaattttgattttgattaaaaatataaatataaatttttgttgcttttaaattataacgaa 37896516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 43396299 - 43396339
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  43396299 atctttttcaatgacaccaataatgtaacaaatataatatc 43396339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 4353032 - 4353071
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  4353032 atctttttcaattacaccaataatataacaaatataatat 4353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 39585238 - 39585156
Alignment:
Q  5 tgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||||||||| ||||| | ||||| ||||| ||||||| |  | |||||| ||||||||| |||||| ||||||| ||||    
T  39585238 tgcgtgtaaattacaaacgattttttatataaatttttgatataaactaaaattataagtatagatatttgtgactttcaaat 39585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 17822142 - 17822191
Alignment:
Q  109 acaaatcatgttaatctttttcaatgacaccaataatatatcaaatataa 158  Q
    ||||||||| || || ||||||||||||| |||||||||| |||||||||    
T  17822142 acaaatcatattcatatttttcaatgacaacaataatataacaaatataa 17822191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 31659579 - 31659514
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataa 92  Q
    ||||| || |||||||||||||||||||||| | || ||||||||||| |  |||| |||||||||    
T  31659579 ttttatatgaaattttgattttgattaaaattaaaaatataaatatttgttgctttcaaattataa 31659514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 1584885 - 1584941
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaatta 89  Q
    ||||||||||||||||||||||||  |||| ||||||| ||| | ||||| ||||||    
T  1584885 ataaaattttgattttgattaaaagtataaatataaatgtttgttactttcaaatta 1584941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 2529864 - 2529904
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  2529864 atctttttcaatgacaccaacaatttaacaaatataatatc 2529904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 2530428 - 2530368
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||||||||||  | || ||||||| ||| |  |||||||||||||||    
T  2530428 ataaaattttgattttgattaaaactaaaaatataaatgtttgttgcttttaaattataac 2530368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 6752334 - 6752394
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||| |||||||||||||  | || ||||||||| |||  |||||||||||||||    
T  6752334 ataaaattttaattttgattaaaactaaaaatataaatatatatttcttttaaattataac 6752394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 19361432 - 19361472
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  19361432 atctttttcaatgacaccaacaatgtaacaaatataatatc 19361472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 28746611 - 28746571
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  28746611 atctttttcaatgacaccaacaatgtaacaaatataatatc 28746571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 39178165 - 39178221
Alignment:
Q  182 taacatcagcaatgtaacattattacagaaaaatttatttaaaaatataattagaat 238  Q
    |||||||| |||| ||||||||||| || |||||||||||||   ||||||||||||    
T  39178165 taacatcaacaatataacattattataggaaaatttatttaagggtataattagaat 39178221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 42112102 - 42112062
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||| ||||||||||||| |||||| |||||||||||||    
T  42112102 atctttgtcaatgacaccaacaatataacaaatataatatc 42112062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 42416486 - 42416526
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  42416486 atctttttcaatgacaccaacaatgtaacaaatataatatc 42416526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 34196410 - 34196330
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttt 82  Q
    |||||||||||||||||  ||||| ||||| || |||||||||||||||||||||| ||||||| |||||| | |||||||    
T  34196410 taatgcgtgtaaattatggacggtattttatatgaaattttgattttgattaaaattataagtacaaatatgtgtgacttt 34196330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 2383293 - 2383227
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  2383293 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 2383227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 35096659 - 35096594
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||||| | | ||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  35096659 tgtaaattataaaagatattttatataaaattttgattttgattaaaattataagtacaaatattt 35096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 10643788 - 10643711
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataa 92  Q
    ||||||||||||||||||||||  ||||||||||||||      ||||  ||||||||| |||||||||||||| |||||||||    
T  10643788 tgtaaattataaacggtgttttttataaaattttgatt------aaaagtataagtatagatatttatgactttcaaattataa 10643711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 1071766 - 1071703
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||||||||||| || |||||||||||||| || |||||| ||||||||||||  ||||||||    
T  1071766 aacaaatcatgtttatatttttcaatgacactaacaatataacaaatataatataaattcttat 1071703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 18295270 - 18295356
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| ||||||| ||||||  |||| |||||||||||||||||||||||||  |||||| |||||||| | ||||| ||||| ||||    
T  18295270 gcgtgcaaattatgaacggtaatttatataaaattttgattttgattaaaat-ttaagtacaaatatttgttactttcaaattgtaac 18295356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 33954667 - 33954617
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgatt 52  Q
    ||||||||||||||||| |||| ||||||| |||| |||||||||||||||    
T  33954667 taatgcgtgtaaattatgaacgatgttttatataatattttgattttgatt 33954617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 36213974 - 36213920
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataa 62  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||    
T  36213974 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataa 36213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 40324236 - 40324298
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaat 70  Q
    ||||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||| ||||    
T  40324236 gtgtaaattatgaacagtattttatatgaaattttgattttgattaaaattataagtacaaat 40324298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 27591206 - 27591157
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatat 156  Q
    ||||||||||| || |||||||||||||||| |||||||||| |||||||    
T  27591206 caacaaatcatatttatctttttcaatgacaacaataatataacaaatat 27591157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32217002 - 32217075
Alignment:
Q  1 ttaatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||| ||||||||||||  | ||||  ||  ||||||||||||||||||||| |||||||||| |||||    
T  32217002 ttaatgcgtataaattataaacaatattttttatgcaattttgattttgattaaaattataagtataattattt 32217075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 43990414 - 43990471
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||| |||||| |||||| ||  |||||||||||||||| ||||||||||||||    
T  43990414 aaattttggttttgaataaaattattggtataaatatttatgaattttaaattataac 43990471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 24549198 - 24549287
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||| ||||||| |||| | ||||| || ||||||| ||| |||||||||| ||||||| | ||  |||||||||||||||| ||||    
T  24549198 taatgcgtgcaaattatgaacgatattttatatgaaatttttattctgattaaaattataagtacagat--ttatgacttttaaattgtaac 24549287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 26195161 - 26195113
Alignment:
Q  40 tttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    |||||||||||||||||  |||| || ||||||||||||||||||||||    
T  26195161 tttgattttgattaaaagtataaatacaaatatttatgacttttaaatt 26195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 16568297 - 16568238
Alignment:
Q  182 taacatcagcaatgtaacattattacagaaaaatttatttaaaaatataattagaataat 241  Q
    |||||||| |||| |||||||| || |||||||||||||||||  |||||||| ||||||    
T  16568297 taacatcaacaatataacattagtatagaaaaatttatttaaaggtataattaaaataat 16568238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 19134073 - 19133994
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||||||| |||| | ||||| || ||||||||||||| |||||||| | ||||| || ||||||||| ||| ||||    
T  19134073 gtgtaaattatgaacgattttttatatgaaattttgatttttattaaaattagaagtacaattatttatgaatttcaaat 19133994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 19317614 - 19317700
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaata--tttatgacttttaaa 86  Q
    ||||| |||||||||||||||  ||||||  || ||||||||||||| |||||||| ||| ||||| |||  ||| |||||||||||    
T  19317614 taatgtgtgtaaattataaacaatgttttttatgaaattttgattttcattaaaattatatgtatagatatgtttgtgacttttaaa 19317700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 34118848 - 34118903
Alignment:
Q  38 attttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||| ||||||| |||||||  ||||||| ||||| ||||    
T  34118848 attttgattttgattaaaattataagtacaaatattcgtgactttcaaattgtaac 34118903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 12599614 - 12599564
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    |||||||||||| | |||||||||||| ||||||||||||  |||||||||    
T  12599614 atctttttcaattataccaataatataacaaatataatataaattcttatc 12599564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 39544387 - 39544445
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaa 85  Q
    |||| ||| ||| |||||||||||||||||| ||| |||||||| ||| ||||||||||    
T  39544387 tttttcattaaaatttgattttgattaaaattataggtataaatgtttgtgacttttaa 39544445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27058746 - 27058697
Alignment:
Q  44 attttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||| ||| ||||| |||||| ||||||| ||||||||||    
T  27058746 attttgattaaaattatatgtatacatatttgtgactttcaaattataac 27058697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 1117810 - 1117850
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  1117810 atctttttcaatgacaccaacaatgtaacaaatataatatc 1117850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 3079500 - 3079540
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  3079500 atctttttcaatgacaccaacaatgtaacaaatataatatc 3079540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 4631037 - 4631077
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  4631037 atctttttcaatgacaccaacaatgtaacaaatataatatc 4631077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 13552194 - 13552154
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  13552194 atctttttcaatgacaccaacaatgtaacaaatataatatc 13552154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 18612390 - 18612426
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  18612390 tttttcaatgacaccaacaatataacaaatataatat 18612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 19000261 - 19000201
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||| |||  |||| |||| || ||| ||||||| ||||||||||    
T  19000261 ataaaattttgattttgattcaaaatataaatatagatgtttgtgactttcaaattataac 19000201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25915081 - 25915125
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaa 56  Q
    |||||||||||||||||||  || |||||||||||||||| ||||    
T  25915081 aaattataaacggtgttttttatgaaattttgattttgatcaaaa 25915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 32292192 - 32292232
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  32292192 atctttttcaatgacaccaacaatgtaacaaatataatatc 32292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 34912435 - 34912475
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  34912435 atctttttcaatgacaccaacaatgtaacaaatataatatc 34912475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 35423570 - 35423610
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  35423570 atctttttcaatgacaccaacaatgtaacaaatataatatc 35423610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 40202013 - 40202053
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  40202013 atctttttcaatgacaccaacaatgtaacaaatataatatc 40202053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 41452616 - 41452656
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  41452616 atctttttcaatgacaccaacaatgtaacaaatataatatc 41452656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 2442354 - 2442299
Alignment:
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  2442354 ccaacaaatcatgtttatctttttcaatgaaaccaataatataacaaatataatat 2442299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 415381 - 415315
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  415381 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 415315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 1658112 - 1658046
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  1658112 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 1658046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 6336059 - 6335993
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  6336059 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 6335993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 37402065 - 37402131
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  37402065 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 37402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 5934643 - 5934700
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||    
T  5934643 aaattttgattttgattaaaattataagtataaatatttgtaacttctaaattataac 5934700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 14031620 - 14031686
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  14031620 gtgtaaattatgaacagtattttatatgaaattttgattttgattaaaattataagtacaaatattt 14031686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 36802080 - 36802014
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| || ||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  36802080 gtgtaaattatgaaaggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 36802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 11876388 - 11876441
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  11876388 caacaaatcatatttatctttttcaatgacaacaataatataacaaatataata 11876441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 11891395 - 11891448
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  11891395 caacaaatcatatttatctttttcaatgacaacaataatataacaaatataata 11891448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 15172376 - 15172425
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    |||||||||||||||||||| |||||| ||||||||||||  ||||||||    
T  15172376 atctttttcaatgacaccaacaatatagcaaatataatataaattcttat 15172425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 19341951 - 19341910
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatata 148  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  19341951 caacaaatcatgtttatctttttcaatgacaacaataatata 19341910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 18887318 - 18887369
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||||||||||||||| ||| ||||| || ||| ||||||||||||    
T  18887318 aaattttgattttgattaaaattatatgtatagatgtttgtgacttttaaat 18887369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 32554953 - 32554844
Alignment:
Q  44 attttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctttttcaatgacaccaata 143  Q
    |||||||||||||| ||||||| |||||||| ||||||| ||||| |||  ||| | |||    || |||||||||| ||||||||| || ||| |||||    
T  32554953 attttgattaaaattataagtacaaatatttgtgactttcaaattgtaa--aaaatccaa----aaaaaatcatgtttatctttttctataacaacaata 32554860  T
Q  144 atatatcaaatataat 159  Q
    || || ||||||||||    
T  32554859 atttaacaaatataat 32554844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 9183967 - 9184017
Alignment:
Q  111 aaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||| |||||||||||| ||| |||| ||||| ||||||||||||    
T  9183967 aaatcatgtttatctttttcaataacaacaattatataacaaatataatat 9184017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 11420395 - 11420445
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    |||||||||||||| ||||| |||||| ||||||||||||  |||||||||    
T  11420395 atctttttcaatgataccaacaatataacaaatataatataaattcttatc 11420445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 13766097 - 13766015
Alignment:
Q  12 aaattataaacggtgttttaca-taaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||| || |||||||| || |||||||||||||||||||||||  |||| |||||||  || | ||||| ||||||||||    
T  13766097 aaattatgaagggtgtttttcaataaaattttgattttgattaaaagtataaatataaatgattgttactttcaaattataac 13766015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 15899186 - 15899132
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||| || ||||||||||||||||   |||||||| ||||||||||||    
T  15899186 caacaaatcatatttatctttttcaatgacaatgataatataacaaatataatat 15899132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 39429925 - 39429863
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||||||||||||  || ||||||| |||||||||||||  | || |||||||||||    
T  39429925 aaattataaacggtgttttttatgaaattttaattttgattaaaagtaaaaatataaatattt 39429863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 2442470 - 2442421
Alignment:
Q  111 aaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    |||| ||||| ||||||||||||  ||||||||||||| |||||||||||    
T  2442470 aaattatgtttatctttttcaatagcaccaataatataacaaatataata 2442421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 10867217 - 10867278
Alignment:
Q  100 acaaaaccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||| |||||||||||| || |||| ||||||||| ||||| ||||||  |||||||||||    
T  10867217 acaaacccaacaaatcatatttatctatttcaatgataccaacaatataataaatataatat 10867278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 11578977 - 11579014
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatatc 162  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  11578977 tttttcaatgacaccaacaatataacaaatataatatc 11579014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 15898949 - 15898892
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||||| | || ||||||||||| |  ||||||| |||||||    
T  15898949 aaattttgattttgattaaaattaaaaatataaatatttgttgcttttaatttataac 15898892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 4430073 - 4430117
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaa 56  Q
    ||||||| |||||||||||  ||||||||||||||| ||||||||    
T  4430073 aaattatgaacggtgttttttataaaattttgatttagattaaaa 4430117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 9014909 - 9014945
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataa 158  Q
    |||||||||||||||| |||||||||| |||||||||    
T  9014909 atctttttcaatgacaacaataatataacaaatataa 9014945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 13755277 - 13755225
Alignment:
Q  101 caaaaccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaa 153  Q
    |||||| ||| ||||||||| |||| ||||||| |||||||||||||| ||||    
T  13755277 caaaacaaactaatcatgtttatctatttcaataacaccaataatataacaaa 13755225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 14449894 - 14449854
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  14449894 atctttttcaatgacaccaacaatgtaacaaatataatatc 14449854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 27877436 - 27877396
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  27877436 atctttttcaatgacaccaacaatgtaacaaatataatatc 27877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 27914411 - 27914371
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  27914411 atctttttcaatgacaccaacaatgtaacaaatataatatc 27914371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 27960830 - 27960790
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  27960830 atctttttcaatgacaccaacaatgtaacaaatataatatc 27960790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 28017617 - 28017577
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  28017617 atctttttcaatgacaccaacaatgtaacaaatataatatc 28017577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 39486321 - 39486281
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  39486321 atctttttcaatgacaccaacaatgtaacaaatataatatc 39486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 40048962 - 40048922
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  40048962 atctttttcaatgacaccaacaatgtaacaaatataatatc 40048922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 41526096 - 41526136
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  41526096 atctttttcaatgacaccaacaatgtaacaaatataatatc 41526136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 44654733 - 44654773
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  44654733 atctttttcaatgacaccaacaatgtaacaaatataatatc 44654773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 44908324 - 44908364
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  44908324 atctttttcaatgacaccaacaatgtaacaaatataatatc 44908364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 82029 - 81963
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  82029 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 81963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 22160560 - 22160494
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  22160560 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 22160494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23316109 - 23316043
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  23316109 gtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 23316043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26492575 - 26492483
Alignment:
Q  1 ttaatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||| |||| || ||| ||||| || ||| |||||||||||||||||| ||||||||| |||||| | ||||| ||||| ||||    
T  26492575 ttaatgcgtgtaatttatgaatggtattttatatcaaaatttgattttgattaaaattataagtatatatatttgtaactttaaaattgtaac 26492483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 33997594 - 33997750
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaac 106  Q
    |||||||||| | |||| | ||||| || ||||||| |||||||||||||| |||  |||| |||||| ||| ||||||||| |||         ||| |    
T  33997594 cgtgtaaattgtgaacgatattttatatgaaattttaattttgattaaaattatacatatagatatttgtgaattttaaattgtaat--------aaatc 33997685  T
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
     || |||||||||| ||||||||| |||||| |||||||||| ||||||||||||  ||||||||    
T  33997686 aaataaatcatgtttatctttttcgatgacatcaataatataacaaatataatataaattcttat 33997750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 37013159 - 37013241
Alignment:
Q  12 aaattataaacggtgttttac-ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||  |||| |||||||  || | ||||||||||||||||    
T  37013159 aaattatgaacggtgtttttctataaaattttgattttgattaaaagtataattataaattattgttacttttaaattataac 37013241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 53450729 - 53450807
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||| || ||| ||||| || ||||||||||||||| |||||| ||||||| |||||||| ||||||| ||||    
T  53450729 tgtaaattatgaagggtattttatatgaaattttgattttgactaaaattataagtacaaatatttgtgactttcaaat 53450807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 24911464 - 24911358
Alignment:
Q  34 taaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataacgaaagtacaaaaccaacaaatcatgttaatctttttcaat 133  Q
    ||||||||||||| | |||||||| ||||||| |||||||| ||||||||||||| ||        | ||| ||||||||| ||| | ||||||||||||    
T  24911464 taaaattttgattataattaaaattataagtacaaatatttgtgacttttaaattgta--------ataaacccaacaaattatgcttatctttttcaat 24911373  T
Q  134 gacaccaataatata 148  Q
    |||| ||||||||||    
T  24911372 gacaacaataatata 24911358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 3083476 - 3083385
Alignment:
Q  2 taatgcgtgtaaattataaacggtgttttacat-aaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| || ||||||||||| | | ||||| || |||||||| |||||||||||||| ||||||| |||||||| ||||||| ||||||||||    
T  3083476 taatgtgtataaattataaatgatattttatatgaaaattttaattttgattaaaat-ataagtacaaatatttgtgactttcaaattataac 3083385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 23424276 - 23424335
Alignment:
Q  34 taaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| |||||||||||||||||| |||| ||||  ||||||||||||||||||| ||||    
T  23424276 taaaactttgattttgattaaaattataaatataggtatttatgacttttaaattgtaac 23424335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 36196658 - 36196596
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||||  | ||||| || |||||||||||||||||||||| ||| ||||||||||||    
T  36196658 aaattataaacaatattttatatgaaattttgattttgattaaaattatatgtataaatattt 36196596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 17271984 - 17271919
Alignment:
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||||||||||||| |||||||||||||| ||||| ||| ||  ||||||||| | |||||||||    
T  17271984 ccaacaaatcatgtttatctttttcaatgataccaacaatctagtaaatataatgtacattcttat 17271919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 21038665 - 21038609
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||||||||  |||||||| || ||| ||||||||||||||||||    
T  21038665 aaattttgattttgattaaaatg-taagtatagatgtttgtgacttttaaattataac 21038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36694525 - 36694609
Alignment:
Q  1 ttaatgcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaa 86  Q
    |||||||||||||||| |||||||| ||||| || |||| ||||| |||||| |||| ||||   ||||||||| |||||||||||    
T  36694525 ttaatgcgtgtaaattttaaacggtattttatatgaaatattgatattgatt-aaattataaccgtaaatatttgtgacttttaaa 36694609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 34410361 - 34410281
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||||| || | | ||||| || ||||||||||||||| |||||  ||||||| |||||||| ||||||| ||||    
T  34410361 cgtgtaaattatgaatgatattttatatgaaattttgattttgactaaaactataagtaaaaatatttgtgactttcaaat 34410281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 31106422 - 31106481
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtata 67  Q
    ||||||||||| ||| || ||||| || |||||||||||||||||||||| |||| ||||    
T  31106422 gtgtaaattatgaaccgtattttatatgaaattttgattttgattaaaattataaatata 31106481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 32639956 - 32640011
Alignment:
Q  186 atcagcaatgtaacattattacagaaaaatttatttaaaaatataattagaataat 241  Q
    |||| |||| ||||||||||| ||||||||||||||||| || ||||| |||||||    
T  32639956 atcaacaatataacattattatagaaaaatttatttaaagatgtaatttgaataat 32640011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 43096956 - 43097019
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    ||||||||||||| ||| |||||||||||||  | |||||| ||||||||||||  ||||||||    
T  43096956 aacaaatcatgtttatccttttcaatgacacttacaatataacaaatataatatgaattcttat 43097019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 55109981 - 55109918
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatatccattcttat 171  Q
    |||||||||||||  ||||||| ||||||| ||||||||||  |||||||||||  ||||||||    
T  55109981 aacaaatcatgtttttcttttttaatgacatcaataatataataaatataatataaattcttat 55109918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 2766065 - 2766103
Alignment:
Q  123 tctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  2766065 tctttttcaatgtcaccaataatataacaaatataatat 2766103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 25921185 - 25921131
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataa 62  Q
    ||||||||||| |||| | ||||| || |||||||||||||||||||||| ||||    
T  25921185 gtgtaaattatgaacgatattttatatgaaattttgattttgattaaaattataa 25921131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 32820000 - 32820038
Alignment:
Q  103 aaaccaacaaatcatgttaatctttttcaatgacaccaa 141  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  32820000 aaaccaacatatcatgtttatctttttcaatgacaccaa 32820038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 4379896 - 4379949
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    ||||||||||||| |||||||||||| ||| ||||||||||  || ||||||||    
T  4379896 aacaaatcatgtttatctttttcaataacatcaataatatagtaagtataatat 4379949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 32820094 - 32820127
Alignment:
Q  208 agaaaaatttatttaaaaatataattagaataat 241  Q
    |||||||||||||||||| |||||||||||||||    
T  32820094 agaaaaatttatttaaaagtataattagaataat 32820127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 34461849 - 34461902
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaatcataagta 65  Q
    ||||||| |||||| ||||| || |||||||||||||||||||||  |||||||    
T  34461849 aaattatgaacggtattttatatgaaattttgattttgattaaaactataagta 34461902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 51187448 - 51187485
Alignment:
Q  125 tttttcaatgacaccaataatatatcaaatataatatc 162  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  51187448 tttttcaatgacaccaacaatataacaaatataatatc 51187485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 54183665 - 54183612
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaata-tttatgacttttaaatt 88  Q
    |||||||| |||| |||||||| ||||||||||||| |||||| ||||||||||    
T  54183665 aaattttggtttttattaaaattataagtataaatattttatggcttttaaatt 54183612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 5105637 - 5105689
Alignment:
Q  108 aacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    |||||| ||| || |||||||||||||| ||||| |||||| |||||||||||    
T  5105637 aacaaaccatatttatctttttcaatgataccaacaatataacaaatataata 5105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 8150986 - 8151026
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  8150986 atctttttcaatgacaccaacaatgtaacaaatataatatc 8151026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 11180689 - 11180729
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  11180689 atctttttcaatgacaccaacaatgtaacaaatataatatc 11180729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 12214428 - 12214511
Alignment:
Q  12 aaattataaacggtgt--tttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||||||  |||  || |||||||||||||||||||||| | || ||||||| ||| | ||||| || |||||||    
T  12214428 aaattataaacggtgtattttttatgaaattttgattttgattaaaattaaaaatataaatgtttgttactttcaagttataac 12214511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 17616347 - 17616399
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatatttatgacttttaaatt 88  Q
    |||||||||||||||||||||| || | ||  ||||||| |||||||||||||    
T  17616347 aaattttgattttgattaaaattattaataccaatatttgtgacttttaaatt 17616399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 17942667 - 17942587
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaa-ttttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    |||||||||| ||||| | ||||| |||||| ||||||| | ||||||||| |||||| || |||||| | ||||||||||    
T  17942667 gtgtaaattacaaacgatattttatataaaaattttgatgtagattaaaattataagtgtagatatttgttacttttaaat 17942587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 17976229 - 17976269
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  17976229 atctttttcaatgacaccaacaatgtaacaaatataatatc 17976269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 25881795 - 25881835
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  25881795 atctttttcaatgacaccaacaatgtaacaaatataatatc 25881835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 26097943 - 26097903
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  26097943 atctttttcaatgacaccaacaatgtaacaaatataatatc 26097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 39651517 - 39651557
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  39651517 atctttttcaatgacaccaacaatgtaacaaatataatatc 39651557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 39657495 - 39657535
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  39657495 atctttttcaatgacaccaacaatgtaacaaatataatatc 39657535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 40951837 - 40951877
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  40951837 atctttttcaatgacaccaacaatgtaacaaatataatatc 40951877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 41144832 - 41144792
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  41144832 atctttttcaatgacaccaacaatgtaacaaatataatatc 41144792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 43117297 - 43117337
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  43117297 atctttttcaatgacaccaacaatgtaacaaatataatatc 43117337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 46250844 - 46250884
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||| ||||| |||||| |||||||||||||    
T  46250844 atctttttcaatgataccaacaatataacaaatataatatc 46250884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 51153265 - 51153305
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  51153265 atctttttcaatgacaccaacaatgtaacaaatataatatc 51153305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 21236877 - 21236813
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  21236877 tgtaaattataaacggtattttacataaagttttgatttt-attcaaattataagtataaatattt 21236813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 31383631 - 31383566
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||||| |||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||    
T  31383631 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 31383566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 3533329 - 3533275
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataatat 161  Q
    |||||||||||||| ||||||| |||||||| ||||||||||  |||||||||||    
T  3533329 caacaaatcatgtttatcttttccaatgacatcaataatataaaaaatataatat 3533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 4996217 - 4996283
Alignment:
Q  27 ttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||| || ||||||||||||||||| |||| ||||| |||||||||| || |||| ||||||||||    
T  4996217 ttttatatgaaattttgattttgatttaaattataaggataaatatttgtggctttcaaattataac 4996283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 13846745 - 13846679
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    ||||||||||| |||||| ||||  || ||||||| |||||||||||||| ||||||| ||||||||    
T  13846745 gtgtaaattatgaacggtattttgtatgaaatttttattttgattaaaattataagtacaaatattt 13846679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 20603968 - 20603914
Alignment:
Q  106 ccaacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    |||| |||||||||| ||||||||||| || |||||||||||| |||||||||||    
T  20603968 ccaaaaaatcatgtttatctttttcaacgaaaccaataatataacaaatataata 20603914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 23259699 - 23259748
Alignment:
Q  44 attttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||| ||||    
T  23259699 attttgattaaaattataggtataaatatttatgatttttaaattgtaac 23259748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 26306005 - 26306062
Alignment:
Q  12 aaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaa 69  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||  |||| ||||||    
T  26306005 aaattatgaacgatgtttttcataaaattttgattttgattaaaagtataaatataaa 26306062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 4118993 - 4119041
Alignment:
Q  9 tgtaaattataaacggtgttttacataaaattttgattttgattaaaat 57  Q
    ||||||||||||||||| ||||  || ||||||||||||||||||||||    
T  4118993 tgtaaattataaacggtattttttatgaaattttgattttgattaaaat 4119041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 25342284 - 25342228
Alignment:
Q  37 aattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||||||||||  |||||| |||||||| ||||||| ||||| ||||    
T  25342284 aattttgattttgattaaaattgtaagtacaaatatttgtgactttcaaattgtaac 25342228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 22793875 - 22793938
Alignment:
Q  11 taaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatattt 74  Q
    |||||||| |||||| ||||| ||||| |||| ||||||||||||||  |||||| ||||||||    
T  22793875 taaattatgaacggtattttatataaattttttattttgattaaaattttaagtacaaatattt 22793938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 8866843 - 8866893
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatccattcttatc 172  Q
    |||||||||||||| ||||| |||||| ||||||||||||  |||||||||    
T  8866843 atctttttcaatgataccaacaatataacaaatataatataaattcttatc 8866893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 22793160 - 22793241
Alignment:
Q  7 cgtgtaaattataaacggtgttttacataaa-attttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||||||| ||||| | ||||| || || |||||||| | ||||||||| ||||||||||||| || ||||||| ||||    
T  22793160 cgtgtaaattacaaacgatattttatatcaatattttgatatagattaaaattataagtataaatacttgtgactttcaaat 22793241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 6018865 - 6018825
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  6018865 atctttttcaatgacaccaacaatgtaacaaatataatatc 6018825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 7540889 - 7540929
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  7540889 atctttttcaatgacaccaacaatgtaacaaatataatatc 7540929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 8479130 - 8479078
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaa 85  Q
    ||||||||||||||||||| ||||| |||  |||| |||||||| ||||||||    
T  8479130 ataaaattttgattttgatcaaaattatatttatatatatttataacttttaa 8479078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 17505270 - 17505310
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  17505270 atctttttcaatgacaccaacaatgtaacaaatataatatc 17505310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 23659409 - 23659361
Alignment:
Q  39 ttttgattttgattaaaatcataagtataaatatttatgacttttaaat 87  Q
    ||||||| | ||||||||| ||||||||| |||||| ||||||||||||    
T  23659409 ttttgatatagattaaaattataagtatagatatttgtgacttttaaat 23659361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 29042987 - 29043027
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  29042987 atctttttcaatgacaccaacaatgtaacaaatataatatc 29043027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 29976097 - 29976137
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  29976097 atctttttcaatgacaccaacaatgtaacaaatataatatc 29976137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 34207294 - 34207254
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  34207294 atctttttcaatgacaccaacaatgtaacaaatataatatc 34207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 34248027 - 34247987
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    ||||||||||||||||||| |||| || |||||||||||||    
T  34248027 atctttttcaatgacaccagtaatgtaacaaatataatatc 34247987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 97249 - 97335
Alignment:
Q  6 gcgtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||||| |||||| ||||| || ||||| ||||||||||| |||| | ||||| |||||||| ||||||||||||| ||||    
T  97249 gcgtgtaaattatgaacggtattttatatgaaattatgattttgatt-aaattaaaagtacaaatatttgtgacttttaaattctaac 97335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 97106 - 97070
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataa 158  Q
    |||||||||||||||| |||||||||| |||||||||    
T  97106 atctttttcaatgacaacaataatataacaaatataa 97070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 1418 - 1503
Alignment:
Q  8 gtgtaaattataaacggtgttttacataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    ||||||||||| |||||| ||||| || | ||||||||||| ||||||||  ||||||||||||| | || |||| ||||| ||||    
T  1418 gtgtaaattatgaacggtattttatattatattttgattttaattaaaattttaagtataaatatgtttgtctttcaaattgtaac 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 3224 - 3260
Alignment:
Q  36 aaattttgattttgattaaaatcataagtataaatat 72  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  3224 aaattttgattttaattaaaattataagtataaatat 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 16966 - 16926
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  16966 atctttttcaatgacaccaataatgtaacaaatataatatc 16926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 5869 - 5809
Alignment:
Q  33 ataaaattttgattttgattaaaatcataagtataaatatttatgacttttaaattataac 93  Q
    |||||||||||||| | |||||||| ||||||| |||||||| ||||||| ||||| ||||    
T  5869 ataaaattttgattataattaaaattataagtacaaatatttgtgactttcaaattctaac 5809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 226355 - 226408
Alignment:
Q  107 caacaaatcatgttaatctttttcaatgacaccaataatatatcaaatataata 160  Q
    ||||||||||| || || ||||||||||||| ||||||| || |||||||||||    
T  226355 caacaaatcatatttatttttttcaatgacaacaataatgtaacaaatataata 226408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 228571 - 228531
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  228571 atctttttcaatgacaccaacaatgtaacaaatataatatc 228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 138248 - 138208
Alignment:
Q  122 atctttttcaatgacaccaataatatatcaaatataatatc 162  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  138248 atctttttcaatgacaccaacaatgtaacaaatataatatc 138208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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