View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_high_3 (Length: 436)
Name: NF9096_high_3
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 47495843 - 47496274
Alignment:
| Q |
1 |
atatttatatcatatatcaacttttcttctgtgcttgcttgcaaatttgcagttaagcttttttgatcttatgtaagagaatattattgatgatggtgtt |
100 |
Q |
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| T |
47495843 |
atatttatatcatatatcaacttttcttctgtgcttgcttgcaaatttgcaattaagcttttttgatcttatgtaagagaatattattgatgatggtgtt |
47495942 |
T |
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| Q |
101 |
tgggaagccgaaaaaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatacgatctcagattgagccgcgccaatat |
200 |
Q |
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| T |
47495943 |
tgggaagccgaaaaaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatacgatctcagattgagccgcgccaatat |
47496042 |
T |
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| Q |
201 |
cacttttattattgatcctctttccaactcatcacaactcattagattctcttatgagcatattctcaatatgttgataggtcttatcatgactaacatt |
300 |
Q |
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| T |
47496043 |
cacttttattattgatcctctttccaactcatcacaactcattagattctcttatgagcatattctcaatatgttgataggtcttatcatgactaacatt |
47496142 |
T |
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| Q |
301 |
atttctttgttggtccaatcttgagttccaactagtttctgccacaagcaaaccaatggaagcaaaag------------tgcaataaatgactatattt |
388 |
Q |
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| T |
47496143 |
atttctttgttggtccaatcttgagttccaaatagtttctgccacaagcaaaccaatggaagcaaaagtgcaataggaattgcaataaatgactatattt |
47496242 |
T |
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| Q |
389 |
atgtcactttctttctgatggtacgtacatgt |
420 |
Q |
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| T |
47496243 |
atgtcactttctttctgatggtacgtacatgt |
47496274 |
T |
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