View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_high_6 (Length: 408)
Name: NF9096_high_6
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 173 - 395
Target Start/End: Complemental strand, 32772354 - 32772132
Alignment:
| Q |
173 |
cttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccactagatcttactcctcttct |
272 |
Q |
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| T |
32772354 |
cttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccactagatcttactcctcttct |
32772255 |
T |
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| Q |
273 |
tccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctcaaagcttcacaaatt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32772254 |
tccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctcaaagcttcacatatt |
32772155 |
T |
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| Q |
373 |
gtcaaaggcaaatgaacccatct |
395 |
Q |
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||||||||||||||||||||||| |
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| T |
32772154 |
gtcaaaggcaaatgaacccatct |
32772132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32772526 - 32772452
Alignment:
| Q |
1 |
ccaaactcttcttgtatcttttcatcaaccaaatcaatatcaagatcttcaaaaatatgtctcctttgactataa |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32772526 |
ccaaactcttcttgtatcttttcatcaaccaaatcaatatcaagatcttcaaaaatatgtctcctttgactataa |
32772452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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