View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9096_low_10 (Length: 454)

Name: NF9096_low_10
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9096_low_10
NF9096_low_10
[»] chr8 (2 HSPs)
chr8 (41-454)||(44267376-44267784)
chr8 (27-57)||(44267282-44267312)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 41 - 454
Target Start/End: Original strand, 44267376 - 44267784
Alignment:
Q  41 atatttgacaaaaatgtgatcaaacttgtcttaatcaaactgtttgaatggtaagtaaagttattcatcatgttctaatatatatagtagtagttgtaaa 140  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44267376 atatttgacaaaaatgtgatcaaacttatcttaatcaaactctttgaatggtaagtaaagttattcatcatgttctaatatatatagtagtagttgtaaa 44267475  T
Q  141 gaaaacactaatcaatacacattattaaaggctataacatagcatgatgcatttttcacttaaatgttcactatttatacacattggtggacatagtaaa 240  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44267476 gaagacactaatcaatacacattattaaaggctataacataggatgatgcatttttcacttaaatgttcactatttatacacattggtggacaaagtaaa 44267575  T
Q  241 taaaagaaagtggaatgtgagtcttttcaccttattgtaactcattctgtaaagaactactttttccacaagatctttctatctatatataccttcaccg 340  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44267576 t-aaagaaagtggaatatgagtcttttcaccttattgtaactcattctgtaaagaactactttttccacaagatctttctatctatatataccttcacc- 44267673  T
Q  341 gcaaggcaatctttatagaagggaattgtgctggaaacttacaaagtattcaatac-aaaaaagggaaatatggaccaccacaacacaaataattaattt 439  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44267674 ----ggcaatctttatagaagggaattgtgctggaaacttacaaagtattcaatacaaaaaaagggaaatatggaccaccaaaacacaaataattaattt 44267769  T
Q  440 accagagaaaagcag 454  Q
    |||||||||||||||    
T  44267770 accagagaaaagcag 44267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 44267282 - 44267312
Alignment:
Q  27 cataaatgggacttatatttgacaaaaatgt 57  Q
    |||||||||||||||||||||||||||||||    
T  44267282 cataaatgggacttatatttgacaaaaatgt 44267312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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