View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_14 (Length: 425)
Name: NF9096_low_14
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 32772539 - 32772951
Alignment:
| Q |
1 |
agaagatgaagagaaaggtagagttagtatttgtgttccaccaaagaatgctcttttgttgatgaggtgtagatctgatcctgttaaaatggctgcttta |
100 |
Q |
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| T |
32772539 |
agaagatgaagagaaaggtagagttagtatttgtgttccaccaaagaatgctcttttgttgatgaggtgtagatctgatcctgttaaaatggctgcttta |
32772638 |
T |
|
| Q |
101 |
gctaaccgtttttgggaatcacctcttcacaaagaacaagaccaag------------------ttgaagatgtagaacaagcacaagatgaggatagtg |
182 |
Q |
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| T |
32772639 |
gctaaccgtttttgggaatcacctcttcacaaagaacaagaccaagttgaagaacatcatcaaattgaagatgtagaacaagcacaagatgaggatagtg |
32772738 |
T |
|
| Q |
183 |
tagatgtggaacatgaagtggaacaagaagtagaacaaggttacaaca---------------ttgaagaagaaacaaaacaagtagtagaagttgaaag |
267 |
Q |
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| T |
32772739 |
tagatgtggaacatgaagtggaacaagaagtagaacaaggttacaacattgaaatggagcaagttgaagaagaaacaaaacaagtagtagaagttgaaag |
32772838 |
T |
|
| Q |
268 |
agtatcacaagaagatagcatttgtgaaagtgaaacacaaggtagtgaggaaaacaatgaaattgaaagtaaaataaacgaagaagttgatcaagtagcc |
367 |
Q |
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| T |
32772839 |
agtatcacaagtagatagcatttgtgaaagtgaaacacaaggtagtgaggaaaacaatgaaattgaaagtaaaataaacgaagaagttgatgaagtagcc |
32772938 |
T |
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| Q |
368 |
aatgaagaggaag |
380 |
Q |
| |
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|||||||| |||| |
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| T |
32772939 |
aatgaagatgaag |
32772951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 28419586 - 28419529
Alignment:
| Q |
88 |
aatggctgctttagctaaccgtttttgggaatcacctcttcacaaagaacaagaccaa |
145 |
Q |
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| T |
28419586 |
aatggctgctttggctaattgtttttgggaatcgcctcttcataaaaaacaagaccaa |
28419529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 232960 - 232903
Alignment:
| Q |
88 |
aatggctgctttagctaaccgtttttgggaatcacctcttcacaaagaacaagaccaa |
145 |
Q |
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| T |
232960 |
aatggctgctttggctaattgtttttgggaatcgcctcttcataaaaaacaagaccaa |
232903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 50810212 - 50810155
Alignment:
| Q |
88 |
aatggctgctttagctaaccgtttttgggaatcacctcttcacaaagaacaagaccaa |
145 |
Q |
| |
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|||||||||||| ||||| ||||||||||||| |||||||| ||| ||||||||||| |
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| T |
50810212 |
aatggctgctttggctaattgtttttgggaatcgcctcttcataaaaaacaagaccaa |
50810155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 50865650 - 50865707
Alignment:
| Q |
88 |
aatggctgctttagctaaccgtttttgggaatcacctcttcacaaagaacaagaccaa |
145 |
Q |
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|||||||||||| ||||| ||||||||||||| |||||||| ||| ||||||||||| |
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| T |
50865650 |
aatggctgctttggctaattgtttttgggaatcgcctcttcataaaaaacaagaccaa |
50865707 |
T |
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