View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9096_low_15 (Length: 424)
Name: NF9096_low_15
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 41667595 - 41668007
Alignment:
| Q |
12 |
agattattcttaaagggatttatcgtgggatcatgcaaattgattggatatnnnnnnnnnnnnnntagacagggccggctacagtggggtatacaacgtg |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41667595 |
agatttttcttaaagggatttatcgtgggatcatgcaaattgattggatataaaaaagaaaaaaatagacagggccggctacagtggggtatacaacgtg |
41667694 |
T |
|
| Q |
112 |
caagtaagggtacgatgaagctcatggtcgtgtctcgtgagttgaacgaggaagttgccaaaataggtttttcctaattgttttctttgtccatgttcta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41667695 |
caagtaagggtacgatgaagctcatggtcgtgtctcgtgagttgaacgaagaagttgccaaaataggtttttcctaattgttttctttgtccatgttcta |
41667794 |
T |
|
| Q |
212 |
tttctagagcacccatcatagggtgcattgatctcttaattaagtttatatggtttgctgcatattgcgataaaaattaatgatttcttaaagagaaact |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41667795 |
tttctagagcacccatcatagggtgcattgatctcttaattaagtttatatggtttgctgcatattgcgataaaaattaatgatttcttaaagagaaact |
41667894 |
T |
|
| Q |
312 |
gcatcgctcaaataataatgtcataccatgttacagtacaatgttttaacacaannnnnnnnactactatacgtttttctttttgctagggattttacgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41667895 |
gcatcgctcaaataataatgtcataccatgttacagtacaatgttttaacacaattttttttactactatacgtttttctttttggtagggattttacgt |
41667994 |
T |
|
| Q |
412 |
tgaagcctcgtga |
424 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41667995 |
tgaagcctcgtga |
41668007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University