View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9096_low_17 (Length: 422)

Name: NF9096_low_17
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9096_low_17
NF9096_low_17
[»] chr4 (4 HSPs)
chr4 (1-416)||(40303145-40303560)
chr4 (337-404)||(41668859-41668926)
chr4 (336-404)||(53423287-53423355)
chr4 (334-392)||(19936297-19936355)
[»] chr3 (4 HSPs)
chr3 (337-404)||(43790676-43790743)
chr3 (341-397)||(6784822-6784878)
chr3 (334-404)||(1543204-1543274)
chr3 (334-400)||(39328611-39328677)
[»] chr2 (3 HSPs)
chr2 (334-404)||(14902268-14902338)
chr2 (341-404)||(24026726-24026789)
chr2 (334-402)||(35664557-35664625)
[»] chr8 (1 HSPs)
chr8 (334-404)||(32237002-32237072)
[»] chr1 (2 HSPs)
chr1 (334-392)||(34454146-34454204)
chr1 (334-404)||(27664085-27664160)
[»] chr6 (2 HSPs)
chr6 (335-404)||(4349890-4349959)
chr6 (335-404)||(4350129-4350198)
[»] chr7 (3 HSPs)
chr7 (336-404)||(27746614-27746682)
chr7 (334-404)||(37808031-37808101)
chr7 (361-402)||(36683931-36683972)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 40303145 - 40303560
Alignment:
Q  1 tttatactccaactccacgaattgtgtgtgaaagctaagtaacaaataaagaaacacccccactaattaggtatttttgcttgttagttgtaacttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40303145 tttatactccaactccacgaattgtgtgtgaaagctaagtaacaaataaagaaacacccccactaattaggtatttttgcttgttagttgtaacttgtaa 40303244  T
Q  101 accaaatattcataatagaattagtcataagtcaatgcatgtgtttgtttcatcaatcgtcaatccgaccaagacaatttttacaaattatagtttataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40303245 accaaatattcataatagaattagtcataagtcaatgcatgtgtttgtttcatcaatcgtcaatccgaccaagacaatttttacaaattatagtttataa 40303344  T
Q  201 aacatatgtannnnnnnnctatttaaattagatggaacagtataattaatagagctaaatagtttgatcaaatctccttgtccttgggaattactaacat 300  Q
    ||||||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40303345 aacatatgtattctttttctatttaaatttgatggaacagtataattaatagagctaaatagtttgatcaaatctccttgtccttgggaattactgacat 40303444  T
Q  301 gtgaatacgtgacaatcaaaattagtatcagaaccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatata 400  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  40303445 gtgaatgcgtgacaatcaaaattagtatcagaaccgtttctgagattttggttgcctagagtgaacttacaatttggaccctaactaataaatatatata 40303544  T
Q  401 aacacgaaactcgata 416  Q
    || |||||||| ||||    
T  40303545 aaaacgaaacttgata 40303560  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 41668859 - 41668926
Alignment:
Q  337 tttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||||||||||||| | |||| | |||| || |||||||| |||||||||||||||||||||||||    
T  41668859 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaaca 41668926  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 53423355 - 53423287
Alignment:
Q  336 gtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||| |||||||||||| || |||  ||||| |||||||| || |||||||||||||||||||||||||    
T  53423355 gtttatgagattttggtggtataggatgaacctacaatttaggtcctaactaataaatatatataaaca 53423287  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 19936355 - 19936297
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaa 392  Q
    ||||||||||||||||||| ||||||   |||| ||||||||||| |||||||||||||    
T  19936355 ccgtttctgagattttggtggtctaggacgaacctacaatttgggtcctaactaataaa 19936297  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 43790743 - 43790676
Alignment:
Q  337 tttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    ||||| |||||||||| | |||| | |||||||||||||||| |||||||||||||||||||||||||    
T  43790743 tttctaagattttggtggcctagggcgaacttacaatttgggtcctaactaataaatatatataaaca 43790676  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 6784878 - 6784822
Alignment:
Q  341 tgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatat 397  Q
    |||||||||||| |||||  | ||||||||||||||||  |||||||||||||||||    
T  6784878 tgagattttggtggtctatggcgaacttacaatttgggttctaactaataaatatat 6784822  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 1543204 - 1543274
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||| |||||||||| | ||||| || |||| |||||||||   ||||||||||||||||||| |||||    
T  1543204 ccgtttatgagattttgatggtctaaagcgaacctacaatttgaatcctaactaataaatatataaaaaca 1543274  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 39328677 - 39328611
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatata 400  Q
    |||||| |||||||| ||| |||||| |||||| ||||| || || ||||||||||| |||||||||    
T  39328677 ccgtttatgagatttcggtggtctagggtgaacctacaaattaggtcctaactaatatatatatata 39328611  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 14902268 - 14902338
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||||| |||||||||| |||||  | |||| ||||||||||| |||||||||||||||||||||||||    
T  14902268 ccgtttctaagattttggtggtctatggcgaacatacaatttgggtcctaactaataaatatatataaaca 14902338  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 24026789 - 24026726
Alignment:
Q  341 tgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||||||||| |||||| | |||| |||||||| |  | |||||||||||||||||||||||    
T  24026789 tgagattttggtggtctagggcgaacctacaatttagatcttaactaataaatatatataaaca 24026726  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 35664625 - 35664557
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaa 402  Q
    |||||| |||||||||||| |||||| | |||| |||| |||||  |||||||||||||  ||||||||    
T  35664625 ccgtttttgagattttggtggtctagggcgaacctacattttggatcctaactaataaacctatataaa 35664557  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 32237072 - 32237002
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    ||||||||||||| ||||| | |||    |||| ||||||||||| |||||||||||||||||||||||||    
T  32237072 ccgtttctgagatattggtggcctaagacgaacctacaatttgggtcctaactaataaatatatataaaca 32237002  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 34454204 - 34454146
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaa 392  Q
    ||||||||||||||||||| | |||| | |||| ||||||||||| |||||||||||||    
T  34454204 ccgtttctgagattttggtggcctagggcgaacctacaatttgggtcctaactaataaa 34454146  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 27664160 - 27664085
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttggg-----ccctaactaataaatatatataaaca 404  Q
    ||||||||||||||||||| | |||| | |||| |||||||||||      |||||||||||||||||||||||||    
T  27664160 ccgtttctgagattttggtggcctagggagaacctacaatttgggtcctaacctaactaataaatatatataaaca 27664085  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 4349890 - 4349959
Alignment:
Q  335 cgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||||||||||||||| | |||| | ||||  |||||||||| | |||||| ||||||||||||||||    
T  4349890 cgtttctgagattttggtggcctagggcgaacccacaatttgggtcataactagtaaatatatataaaca 4349959  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 4350129 - 4350198
Alignment:
Q  335 cgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||||||||||||||| | |||| | ||||  |||||||||| | |||||| ||||||||||||||||    
T  4350129 cgtttctgagattttggtggcctagggcgaacccacaatttgggtcataactagtaaatatatataaaca 4350198  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 27746614 - 27746682
Alignment:
Q  336 gtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    ||||||||||||||||| | |||| |||||  || |||||| |  ||||||||||||||||||||||||    
T  27746614 gtttctgagattttggtggcctagggtgaatctataatttgagtgctaactaataaatatatataaaca 27746682  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 37808031 - 37808101
Alignment:
Q  334 ccgtttctgagattttggttgtctagagtgaacttacaatttgggccctaactaataaatatatataaaca 404  Q
    |||||| |||||||||||| || ||| | || | || ||||| || |||||||||||||||||||||||||    
T  37808031 ccgtttatgagattttggtggtttagggcgagcctataatttaggtcctaactaataaatatatataaaca 37808101  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 36683931 - 36683972
Alignment:
Q  361 gtgaacttacaatttgggccctaactaataaatatatataaa 402  Q
    |||||| ||||||||||| |||||||||||||| ||||||||    
T  36683931 gtgaacctacaatttgggtcctaactaataaatttatataaa 36683972  T

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