View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9096_low_2 (Length: 682)

Name: NF9096_low_2
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9096_low_2
NF9096_low_2
[»] chr4 (3 HSPs)
chr4 (19-672)||(31074247-31074899)
chr4 (19-188)||(31067009-31067178)
chr4 (554-672)||(31067290-31067408)
[»] chr7 (1 HSPs)
chr7 (443-505)||(35648534-35648596)
[»] scaffold0054 (1 HSPs)
scaffold0054 (422-459)||(35167-35204)
[»] chr5 (3 HSPs)
chr5 (423-459)||(19534301-19534337)
chr5 (443-478)||(19534995-19535030)
chr5 (423-459)||(18357852-18357888)
[»] chr8 (4 HSPs)
chr8 (417-459)||(5403364-5403406)
chr8 (422-459)||(39605534-39605571)
chr8 (426-456)||(35704272-35704302)
chr8 (427-459)||(5403457-5403489)
[»] chr1 (2 HSPs)
chr1 (456-505)||(15056129-15056179)
chr1 (422-455)||(22024049-22024082)


Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 672
Target Start/End: Original strand, 31074247 - 31074899
Alignment:
Q  19 ttctttaagccacaacttcttcaaatctggatcaccaaggacagttgaaacgacaagtgctccatgaagaggtggattactgtacatgggtctggaaatc 118  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074247 ttctttaagccacaacttcttcaaatctggatcactgaggacagttgaaacgacaagtgctccatgaagaggtggattactgtacatgggtctggaaatc 31074346  T
Q  119 aattgcaattgacttttaacagccacggcttgtttctgatcttcgcaaagcaagctgcaaggaacacaaagtcataagtgttacgttgcggaaagtaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074347 aattgcaattgacttttaacagccacggcttgtttctgatcttcgcaaagcaagctgcaaggaacacaaagtcataagtgttacgttgcggaaagtaatt 31074446  T
Q  219 tacatttcacagtcaagctaaagttctgtaaaccaacttaaggcttcaaactaaagaatttccaatgtttgcatacatatcattgtacacttttcaacta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074447 tacatttcacagtcaagctaaagttctgtaaaccaacttaaggcttcaaactaaagaatttccaatgtttgcatacatatcattgtacacttttcaacta 31074546  T
Q  319 atcacccttcttttagtcatgttaaaagatagagttatggacagaannnnnnngtaaagttacacacatgtttttagtacttgttagtgagtagtatcaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||    
T  31074547 atcacccttcttttagtcatgttaaaagatagagttatggacagaatttttttgtaaagttacacacatg-ttttagtacttgttagtgagtagtatcaa 31074645  T
Q  419 gttggggtgtgcaaaaatgtggttaactgaattgtatccattaatgtggttcagttccaatgcaatttagaaccatgaacacccctagtaccaactaact 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074646 gttggggtgtgcaaaaatgtggttaactgaattgtatccattaatgtggttcagttccaatgcaatttagaaccatgaacacccctagtaccaactaact 31074745  T
Q  519 ctttgacctaatactaatcaataataacaggctacttacctaaggcatccaactctctggccatacagtcccatattttttgcatatgattgagcaagtc 618  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074746 ctttggcctaatactaatcaataataacaggctacttacctaaggcatccaactctctggccatacagtcccatattttttgcatatgattgagcaagtc 31074845  T
Q  619 ctaataaatgaccatcatcaacaaaaatcctgatggcttttacatctctctctg 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31074846 ctaataaatgaccatcatcaacaaaaatcctgatggcttttacatctctctctg 31074899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 31067009 - 31067178
Alignment:
Q  19 ttctttaagccacaacttcttcaaatctggatcaccaaggacagttgaaacgacaagtgctccatgaagaggtggattactgtacatgggtctggaaatc 118  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31067009 ttctttaagccatagcttcttcagttctggatcaccaaggacagttgaaataacaagtgctccatgaagaggtggattactgtacatgggtctggcaatc 31067108  T
Q  119 aattgcaattgacttttaacagccacggcttgtttctgatcttcgcaaagcaagctgcaaggaacacaaa 188  Q
    || |||||||||||||| || ||||| |||||||| | || ||||||||||||||||| |||||| ||||    
T  31067109 aactgcaattgactttttactgccacagcttgtttttcattttcgcaaagcaagctgcgaggaactcaaa 31067178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 554 - 672
Target Start/End: Original strand, 31067290 - 31067408
Alignment:
Q  554 ttacctaaggcatccaactctctggccatacagtcccatattttttgcatatgattgagcaagtcctaataaatgaccatcatcaacaaaaatcctgatg 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||     
T  31067290 ttacctaaggcatccaactctctggccatacagtcccatattttttgcatatgattgagcaactcctattaaatgactatcattaagaaaaatcctgatc 31067389  T
Q  654 gcttttacatctctctctg 672  Q
    |||||| ||||||||||||    
T  31067390 gcttttgcatctctctctg 31067408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 35648534 - 35648596
Alignment:
Q  443 aactgaattgtatccattaatgtggttcagttccaatgcaatttagaaccatgaacaccccta 505  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  35648534 aactgaattgtatccattaatgtagttcagttccaatgcagtttagaaccataaacaccccta 35648596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 459
Target Start/End: Complemental strand, 35204 - 35167
Alignment:
Q  422 ggggtgtgcaaaaatgtggttaactgaattgtatccat 459  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35204 ggggtgtgcaaaaatgtggttaactgaattgtatccat 35167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 19534301 - 19534337
Alignment:
Q  423 gggtgtgcaaaaatgtggttaactgaattgtatccat 459  Q
    |||||||||||||||||||||||||||||||||||||    
T  19534301 gggtgtgcaaaaatgtggttaactgaattgtatccat 19534337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Original strand, 19534995 - 19535030
Alignment:
Q  443 aactgaattgtatccattaatgtggttcagttccaa 478  Q
    ||||||||||||||||||||||||||||| ||||||    
T  19534995 aactgaattgtatccattaatgtggttcaattccaa 19535030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 18357852 - 18357888
Alignment:
Q  423 gggtgtgcaaaaatgtggttaactgaattgtatccat 459  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  18357852 gggtgtgcaaaaatttggttaattgaattgtatccat 18357888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 5403364 - 5403406
Alignment:
Q  417 aagttggggtgtgcaaaaatgtggttaactgaattgtatccat 459  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  5403364 aagtaggggtgtgcaaaaatgtgattaactgaattgtatccat 5403406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 39605534 - 39605571
Alignment:
Q  422 ggggtgtgcaaaaatgtggttaactgaattgtatccat 459  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39605534 ggggtgtgcaaaaatatggttaactgaattgtatccat 39605571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 456
Target Start/End: Original strand, 35704272 - 35704302
Alignment:
Q  426 tgtgcaaaaatgtggttaactgaattgtatc 456  Q
    |||||||||||||||||||||||||||||||    
T  35704272 tgtgcaaaaatgtggttaactgaattgtatc 35704302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 5403489 - 5403457
Alignment:
Q  427 gtgcaaaaatgtggttaactgaattgtatccat 459  Q
    |||||||||||||||| ||||||||||||||||    
T  5403489 gtgcaaaaatgtggttgactgaattgtatccat 5403457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 505
Target Start/End: Original strand, 15056129 - 15056179
Alignment:
Q  456 ccattaatgtggttcagttccaatgcaattta-gaaccatgaacaccccta 505  Q
    |||||||||||||||||||||||| || |||| | ||||||||||||||||    
T  15056129 ccattaatgtggttcagttccaattcagtttatgcaccatgaacaccccta 15056179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Original strand, 22024049 - 22024082
Alignment:
Q  422 ggggtgtgcaaaaatgtggttaactgaattgtat 455  Q
    ||||||||||||||||||||||||| ||||||||    
T  22024049 ggggtgtgcaaaaatgtggttaactcaattgtat 22024082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University