View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_20 (Length: 407)
Name: NF9096_low_20
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_20 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 166 - 392
Target Start/End: Original strand, 249469 - 249700
Alignment:
| Q |
166 |
attaattcggttctgttgtgcatttaagtttctttccataatattcctatatgcactacgaa-----tagatcccatgcttctcatatttccacacagct |
260 |
Q |
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| T |
249469 |
attaattcggttctgttgtgcatttaagtttctttccataatattcctatatgcactacgaaccgaatagatcccatgcttctcatatttccacacagct |
249568 |
T |
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| Q |
261 |
cgatcagtttgaaccgagtgtagtaggggagttcggcatatttgatgagctaacacactgccaaatagaatgccaatattttccgaatgccgctgcttgg |
360 |
Q |
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| T |
249569 |
cgatcagtttgaaccgagtgtagtaggggactccggcatatttgatgagctaacacactgccaaatagaatgccaatattttccgaatgccgctgcttgg |
249668 |
T |
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| Q |
361 |
tatgcggctgtattgtttatcagcaaatatat |
392 |
Q |
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| T |
249669 |
tatgcggctgtattgtttatcagcaaatatat |
249700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 249281 - 249414
Alignment:
| Q |
7 |
atggtgttacaaagaaacaatgcatgcaggctatcttctggctcgttacagaaaggacaatgcactggacaagtgactcctcgagtttgcaaacgcaccc |
106 |
Q |
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| T |
249281 |
atggtgttacaaagaaacaatgcatgcaggctatcttcaggctcgttacagaaaggacaatgcactggacaagtgactcctcgagtttgcaaacgcaccc |
249380 |
T |
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| Q |
107 |
gtattggaaggcagcctcgcgagtagctctccataa |
142 |
Q |
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| T |
249381 |
gtattggaaggcagcct--cgagtagctctccataa |
249414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 28809650 - 28809853
Alignment:
| Q |
166 |
attaattcggttctgttgtgcatttaagtttctttccataatattcctatatgcactacgaa-----tagatcccatgcttctcatatttccacacagct |
260 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
28809650 |
attaattcgattctgttgtgcatttaagtttctttccataatgtttctatatgcaccgcgaactgaatagatcccatgcttctcatatttccacac---- |
28809745 |
T |
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| Q |
261 |
cgatcagtttgaaccgagtgtagtaggggagttcggcatatttgatgagctaacacactgccaaatagaatgccaatattttccgaatgccgctgcttgg |
360 |
Q |
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| T |
28809746 |
----cagtttgaaccaagtgaagtaggggagttcggcatatttgatgagctgacatgctgccaaacagaatgccagtattttcataatgccactgcttgg |
28809841 |
T |
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| Q |
361 |
tatgcggctgta |
372 |
Q |
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|||| ||||||| |
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| T |
28809842 |
tatgaggctgta |
28809853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 28809491 - 28809579
Alignment:
| Q |
36 |
gctatcttctggctcgttacagaaaggacaatgcactggacaagtgactcctcgagtttgcaaacgcacccgtattggaaggcagcctc |
124 |
Q |
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||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
28809491 |
gctatcttcaggctcgttacagaaaggataatgcaccggacaagtgactcctcgagtttgaaaacgtacccgtgttggaaggcagcctc |
28809579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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