View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_23 (Length: 362)
Name: NF9096_low_23
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 50467176 - 50466841
Alignment:
| Q |
20 |
ctaagctccctttatttctatcaactatactaagttaagtgcaaatatatttgcctaaattacaattataaagttcacaaaatgataggaatgattaatg |
119 |
Q |
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| T |
50467176 |
ctaagctccctttatttctatcaactatactaagttaagtgcaaatctatttgcctaaattacaattgtaaagttcacaaaatgataggaatgattaatg |
50467077 |
T |
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| Q |
120 |
gctttatggctgcaccctgtacataatttgctgagaaattgaatccgtattatgtaatgatatgcataattgactccatattatgtagtttttaacacac |
219 |
Q |
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| T |
50467076 |
gctttatggctgcaccctgtacataatttgctgagaaattgaatccgtattatgtaatgatatgcataattgactccatattatgtagtttttaacacac |
50466977 |
T |
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| Q |
220 |
taatgctacagcactaaccttttcgagggaaagagcacggccaagatccagcttgatgccatcatttatcactgacttgtacctcaaaaccatgtcttga |
319 |
Q |
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| T |
50466976 |
taatgctacagcactaaccttttcgagggaaagagcacggccaagatccagcttgatgccatcatttatcactgacttgtacctcaaaaccatgtcttga |
50466877 |
T |
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| Q |
320 |
ctatttttcgcaatggcttccgcaatttctctgctt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50466876 |
ctatttttcgcaatggcttccgcaatttctctgctt |
50466841 |
T |
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