View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_24 (Length: 338)
Name: NF9096_low_24
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15226574 - 15226788
Alignment:
| Q |
1 |
caacttaatatttttaagtataattttcatagtgtaaaattaggtgaacactctggtattctggagtttgattgagtatgtatccaccgtccattcattt |
100 |
Q |
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| T |
15226574 |
caacttaatatttttatgtataattttcatagtgtaaaattaggtgaacactctggtattctagagtttgattgagtatgtatccaccgtccattcattt |
15226673 |
T |
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| Q |
101 |
agtgtcatgtcatattttatatttgtttattttaatgtaaattcaatttgtccataaaatatcaatactggttaccaaacttcaaggtgcttaagaatta |
200 |
Q |
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| T |
15226674 |
agtgtcatgtcatattttatatttgtttattttaatataaattcaatttgtccataaaatatcaatactggttaccaaacttcaaggtgcttaagaatta |
15226773 |
T |
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| Q |
201 |
accttaaaattattg |
215 |
Q |
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| T |
15226774 |
accttaaaattattg |
15226788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 15226865 - 15226898
Alignment:
| Q |
292 |
tgaacaaagttactagctctattgaaagaataat |
325 |
Q |
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| T |
15226865 |
tgaacaaagttactagctctattgaaagaataat |
15226898 |
T |
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