View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9096_low_25 (Length: 295)
Name: NF9096_low_25
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 27775239 - 27775517
Alignment:
| Q |
1 |
cacaattattatctctaatcatacttaacatctaaataatcaagatgctgaaataatcttttagcctattcagttgagctcatatgctgaaataacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27775239 |
cacaattattatctctaatcatacttaacatctaaataatcaagatgctgaaataatcttttagcctattcagttgagctcatatgctggaataacattt |
27775338 |
T |
|
| Q |
101 |
gcccgatagaataatgcagtagccagtaacgatgatttgcagagagaaatatgctgaaatatacataagaagccatgcttataattcaatatgaggattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775339 |
gcccgatagaataatgcagtagccagtaacgatgatttgcagagagaaatatgctgaaatatacataagaagccatgcttataattcaatatgaggattg |
27775438 |
T |
|
| Q |
201 |
aatcataaaatgacaaacttgtggagaaaatagcgagtttgcttgtggatgcaacttgcaattgtctgtcaaccttggt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775439 |
aatcataaaatgacaaacttgtggagaaaatagcgagtttgcttgtggatgcaacttgcaattgtctgtcaaccttggt |
27775517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 27764377 - 27764453
Alignment:
| Q |
5 |
attattatctctaatcatacttaacatctaaataatcaagatgctgaaataatcttttagcctattcagttgagctc |
81 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27764377 |
attaatatctctaatcttacttaacatctaaataatcaagatgctgaaataatcttttagcctattccgttgagctc |
27764453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University