View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9096_low_26 (Length: 286)
Name: NF9096_low_26
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 1513510 - 1513784
Alignment:
| Q |
1 |
atcttccatctcaccaaaataatgagaaagaaaaatggatttgggttcttgacccacccgtctgatagattctagacaatttgtttttaagcaaagaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1513510 |
atcttccatctcaccaaaataatgagaaagaaaaatggatttgggttcttgacccacccgtctgatagattctaggcaatttgtttttaagcaaagaaaa |
1513609 |
T |
|
| Q |
101 |
tatattaaataaacaaaaagttggaggacattaacctgactagcaaccacgtataaatctgtaacc-----nnnnnnnnnnnnnccacgtatacatcatc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
1513610 |
tatattaaataaacaaaaagttggaggacattaacctgactagcaaccacgtatacatctgtaaccaaaaaaaaaaaaaaaaaaccacgtatacatcatc |
1513709 |
T |
|
| Q |
196 |
cctaaacgggtattataatgagtagtaacaaaatgtggtaaaaacatactagatcgaaatccagttgaatgaaac |
270 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1513710 |
cctaaacgggtattacaacgagtagtaacaaaatatggtaaaaacatactagaccgaaatccagttgaatgaaac |
1513784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 30827097 - 30827151
Alignment:
| Q |
216 |
agtagtaacaaaatgtggtaaaaacatactagatcgaaatccagttgaatgaaac |
270 |
Q |
| |
|
|||| ||||||||| ||||||| || |||||||||||||||||||| || ||||| |
|
|
| T |
30827097 |
agtactaacaaaatatggtaaagacgtactagatcgaaatccagtttaaggaaac |
30827151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University