View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_3 (Length: 570)
Name: NF9096_low_3
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 7869679 - 7869398
Alignment:
| Q |
11 |
tttggtgttagaagaaggaagaatgttgtgatataattgaaggagtggttgataggtcatttgattatagattagtgctaattattgtattttagtttct |
110 |
Q |
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| T |
7869679 |
tttggtgttagaagaaggaagaatgttgtgatataattgaaggagtggttgataggtcatttgattatagattagtgctaattattgtattttagtttct |
7869580 |
T |
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| Q |
111 |
ctatgatttttgtttcggttagtctcggaaaactttcactaagattttcgatatgggaatcgattcatgtatgttcaattttgaaaacatttgatgaggt |
210 |
Q |
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| T |
7869579 |
ctatgatttttgtttgggttagtctcgggaaactttcactaagattttcgatatgggaatcgattcatgtatgttcaattctgaaaacattttatgaggt |
7869480 |
T |
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| Q |
211 |
ggatgagtgtgatttttaaaagggctaaaattagtatttttaataatttatagggtatgggtataataatagttttggtgtatgg |
295 |
Q |
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| T |
7869479 |
ggatgagtgtgatttttaaaagggctaaaattagtatttttaataatttatagggtataggt---ataatagttttggtgtatgg |
7869398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 351 - 570
Target Start/End: Complemental strand, 7869342 - 7869125
Alignment:
| Q |
351 |
gacaatactcacttactccttctgttggcgaggccattctttgcaaaaaagtgagttacgatattgtatgaattcacaactaatctcacctataataatt |
450 |
Q |
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| T |
7869342 |
gacaatactcactcactccttctgttggcgaggccattctttgcaaaagaatgagttacgatattgcatgaattcacaactgatctcacctataataatt |
7869243 |
T |
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| Q |
451 |
aagtggacattgaaatgtgtttacgtgatggcgaagaacannnnnnnnncatgcaaaaacgacgacatttaacccatatttgacaattaagaaggggaag |
550 |
Q |
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| T |
7869242 |
aagtgggcattgaaatgtgtttacgtgatggcgaagaata--tttttttcatgcgaaaacgacgacatttaacccatatctaacaattaagaaggggaag |
7869145 |
T |
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| Q |
551 |
ctttcgatctttgtcgagct |
570 |
Q |
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| T |
7869144 |
ctttcgatctttgtcgagct |
7869125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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