View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_30 (Length: 276)
Name: NF9096_low_30
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 41531728 - 41531474
Alignment:
| Q |
1 |
ctaaagcttaatactctctatatatatttgacgactctactttatgcgataaggttaagttgttgtggttagtatatagcatatattaaaaagttaaaag |
100 |
Q |
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| T |
41531728 |
ctaaagcttaatactctctatatatatttgacgactctactttatgctataaggttaagttgttgtggttagtatatagcatatattaaaaagttaaaag |
41531629 |
T |
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| Q |
101 |
aaagacttgtactccatataactatgattaatggaaccaaacggctatgatcaataaaatgatgtggtggtcatccacattgttatcttacatattgcgg |
200 |
Q |
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| T |
41531628 |
aaagacttgtactccatataactatga---atggaaccaaacggctatgatcaataaaatgatgtggtggtcatccacattgttatcttacatattgcgg |
41531532 |
T |
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| Q |
201 |
tggccattgtaacactaaaacgtaaactacttttagcgacaattattaatctttaatg |
258 |
Q |
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| T |
41531531 |
tggccattgtaacactaaaacgtaaactacttttagcgataattattaatctttaatg |
41531474 |
T |
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