View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9096_low_34 (Length: 255)
Name: NF9096_low_34
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_34 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0648 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 3233 - 3007
Alignment:
| Q |
19 |
aatttgagtcaaatggttactttatatgtggatgcattgtcttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3233 |
aatttgagtcaaatggttactttatatgtggatgcattgccttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtatgaagtgcgac |
3134 |
T |
|
| Q |
119 |
aagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctc |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3133 |
cagataggcgaactattgacc-tttcagtcaatagcttgtctggaaaagtgtcaatggaattatttcgtcttgttcaagttcaaacattaaatttatctc |
3035 |
T |
|
| Q |
219 |
acaatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
3034 |
acaatcattttactggaacaataccaaa |
3007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 6274 - 6500
Alignment:
| Q |
19 |
aatttgagtcaaatggttactttatatgtggatgcattgtcttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
6274 |
aatttgagtcaaatggttactttatatgtggatgcattgccttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtatgaagtgcggc |
6373 |
T |
|
| Q |
119 |
aagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctc |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6374 |
cagataggcgaactattgacc-tttcagtcaatagcttgtctggaaaagtgtcaatggaattatttcgtcttgttcaagttcaaacattaaatttatctc |
6472 |
T |
|
| Q |
219 |
acaatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
6473 |
acaatcattttactggaacaataccaaa |
6500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 2702 - 2476
Alignment:
| Q |
19 |
aatttgagtcaaatggttactttatatgtggatgcattgtcttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2702 |
aatttgagtcaaatggttactttatatgtggatgcattgccttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtatgaagtgcggc |
2603 |
T |
|
| Q |
119 |
aagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctc |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2602 |
cagataggcgaactattgacc-tttcagtcaatagcttgtctggaaaagtgtcaatggaattatttcgtcttgttcaagttcaaacattaaatttatctc |
2504 |
T |
|
| Q |
219 |
acaatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
2503 |
acaatcattttactggaacaataccaaa |
2476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 21472 - 21679
Alignment:
| Q |
39 |
tttatatgtggatgcattgtcttctgatacgacaattgagttgtttc-aaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattga |
137 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
21472 |
tttatatgtggatgcattgccttctgatacgacaattgagttgtttccaaaaaggtcaagattatatgtatgaagtgcgaccagataggcgaactattga |
21571 |
T |
|
| Q |
138 |
ccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaac |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21572 |
ccttt-cagtcaatagcttgtctggaaaagtgtcaatggaattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaac |
21670 |
T |
|
| Q |
238 |
aacaccaaa |
246 |
Q |
| |
|
|| |||||| |
|
|
| T |
21671 |
aataccaaa |
21679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 11389 - 11595
Alignment:
| Q |
39 |
tttatatgtggatgcattgtcttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgac |
138 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
11389 |
tttatatgtggatgcattgccttctgatacgacaattgagttgtttcaaaaaggtcaagattatatgtatgaagtgcgaccagataggcgaactattgac |
11488 |
T |
|
| Q |
139 |
cttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaaca |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11489 |
cttt-cagtcaatagcttgtctggaaaagtgtcaatggaattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaaca |
11587 |
T |
|
| Q |
239 |
acaccaaa |
246 |
Q |
| |
|
| |||||| |
|
|
| T |
11588 |
ataccaaa |
11595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 18116888 - 18117053
Alignment:
| Q |
71 |
caattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgt |
170 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| || | || ||||||||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
18116888 |
caattgagttgtttacaaaaggtcaagattatgtgtatgaaatcgaaccagataggcgaactattgac-ttttcagctaataacttgtctggaaaagtgc |
18116986 |
T |
|
| Q |
171 |
caatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaac |
237 |
Q |
| |
|
|| ||| ||||||||| |||||| |||||||||||||||| |||||||||||| |||| | |||||| |
|
|
| T |
18116987 |
cattggaattatttcggcttgttaaagttcaaacattaaacttatctcacaataatttcattggaac |
18117053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 252
Target Start/End: Original strand, 19394068 - 19394249
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| |||| | | |||||||||||| ||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
19394068 |
acaattgagttgtttacaaaaggtcaagattatatttatgaagtccatccggataggcgaactgttgaccttt-cagccaatagcttgtctggagaagtg |
19394166 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaacaccaaactcgat |
252 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||||||||| |||||| ||||||||||| |||| | |||||||| ||| ||| |||| |
|
|
| T |
19394167 |
ccattggaattatttcggcttattcaagttcaaacgttaaatctatctcacaataatttcattggaacaataccgaacacgat |
19394249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 19462112 - 19462277
Alignment:
| Q |
71 |
caattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgt |
170 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| || | || ||||||||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
19462112 |
caattgagttgtttacaaaaggtcaagattatgtgtatgaaatcgaaccagataggcgaactattgac-ttttcagctaataacttgtctggaaaagtgc |
19462210 |
T |
|
| Q |
171 |
caatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaac |
237 |
Q |
| |
|
|| ||| ||||||||| |||||| |||||||||||||||| |||||||||||| |||| | |||||| |
|
|
| T |
19462211 |
cattggaattatttcggcttgttaaagttcaaacattaaacttatctcacaataatttcattggaac |
19462277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 17950806 - 17950905
Alignment:
| Q |
122 |
ataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcaca |
221 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
17950806 |
ataggcgaactattgaccttt-cagccaatagcttgtctggaaaagtgccattggaattgtttcggcttgttcaagttcaaacattaaacttatctcaca |
17950904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 19415121 - 19415271
Alignment:
| Q |
88 |
aaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgt |
187 |
Q |
| |
|
||||||||||||||| ||||| | || | | |||||||||||||||||||||| || |||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
19415121 |
aaaggtcaagattatgtgtatcatgttagtccggataggcgaactattgaccttt-catccaatagcttgtctggagaagtgacattgcaattatttcga |
19415219 |
T |
|
| Q |
188 |
cttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
19415220 |
cttgttcaaatacaaacattaaacttatctcacaataatttgactggaacaa |
19415271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 19456219 - 19456373
Alignment:
| Q |
73 |
attgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtca |
172 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||| ||| ||| ||||||||||||||| || || |||||||||||||||| ||||| || |
|
|
| T |
19456219 |
attgagttgtttacaaaaggtcaagattatgtttataaagtttgaccagaaaggcgaactattgacgatt-catccaatagcttgtctggagaagtgcca |
19456317 |
T |
|
| Q |
173 |
atggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattt |
228 |
Q |
| |
|
||| ||| ||||| ||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
19456318 |
ttggaattgtttcggtttgttcaggttcaaacattaaacttatctcacaataattt |
19456373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 14895453 - 14895296
Alignment:
| Q |
88 |
aaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgt |
187 |
Q |
| |
|
||||||||||| ||| ||||| |||| || | || || |||||||||||||||| ||| |||||||||||| ||| ||||| || ||| ||| ||||| |
|
|
| T |
14895453 |
aaaggtcaagaatatgtgtatcaagtccgtccggagagacgaactattgaccttt-cagccaatagcttgtccggagaagtgccattggaattgtttcgg |
14895355 |
T |
|
| Q |
188 |
cttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| |||| | |||||||| |||||| |
|
|
| T |
14895354 |
cttgttcaagttcaaacgttaaacttatctcacaataatttgattggaacaataccaaa |
14895296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 18104265 - 18104433
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||| || | | || ||| ||||||||| ||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
18104265 |
acaattgagttgtttacaaaaggtcaagattacgtttatgaaatccaaccagaaaggcgaacttttgaccttt-cagctaatagcttgtctggtgaagtg |
18104363 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
|| ||| ||| ||||| ||||||||| |||||||||| || |||||||||||| |||||| |||||||| |
|
|
| T |
18104364 |
ccattggaattgtttcggcttgttcaacttcaaacattgaacttatctcacaataattttattggaacaa |
18104433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 18147749 - 18147917
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| | | | | | | | |||| ||||||||||||||||||| ||| |||||||||||||||| || || |
|
|
| T |
18147749 |
acaattgagttctttacaaaaggtcaagattatgtttcgagaatccaaaaagaaaggcgaactattgaccttt-caggcaatagcttgtctggagaattg |
18147847 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
|| ||| ||| |||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
18147848 |
ccattggaattgtttcagcttgttcaagttcaaacattaaacttatctcacaataattttgttggaacaa |
18147917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 25463971 - 25464137
Alignment:
| Q |
72 |
aattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtc |
171 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||| ||| ||| || || |||||||||||||||| ||| ||||| |||||||||| ||||| | |
|
|
| T |
25463971 |
aattgagttgtttacaaaaggtcaagattatgtttatgaagccggaccggaaagacgaactattgaccttt-cagccaataacttgtctggagaagtgcc |
25464069 |
T |
|
| Q |
172 |
aatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
| ||| ||| |||| || |||||||||||||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
25464070 |
attggaattggttcggctggttcaagttcaaacattaaacttatctcacaataatttcattggaacaa |
25464137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 19381863 - 19381980
Alignment:
| Q |
121 |
gataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcac |
220 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| || || || ||| ||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
19381863 |
gataggcgaactattgaccttt-cacccaatagcttgtctggagaaatgccattggaattgtttcggcttgttcaagttcaaacattgaacttatctcac |
19381961 |
T |
|
| Q |
221 |
aatcattttactggaacaa |
239 |
Q |
| |
|
||| |||| | |||||||| |
|
|
| T |
19381962 |
aataatttcattggaacaa |
19381980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 17726618 - 17726450
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| |||||||||||| || | |||| | | || | || || |||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
17726618 |
acaattgagttgtttacaaaaggtcaagactacaagtatcgactccgtcctgaaagacgaactattgaccttt-cagccaatagcttgtctggtgaagta |
17726520 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
17726519 |
acatcggaattatttcggcttgttcaagttcaaacattaaacttatctcacaataatttcattggaacaa |
17726450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 19027847 - 19027679
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| |||||||||||| || | |||| | | || | || || |||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
19027847 |
acaattgagttgtttacaaaaggtcaagactacaagtatcgactccgtcctgaaagacgaactattgaccttt-cagccaatagcttgtctggtgaagta |
19027749 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
19027748 |
acatcggaattatttcggcttgttcaagttcaaacattaaacttatctcacaataatttcattggaacaa |
19027679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 19334931 - 19335083
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| || | || ||||| || ||||||||||||| ||| |||| |||| ||||| ||||| |
|
|
| T |
19334931 |
acaattgagttgtttacaaaaggtcaagattatatctatcaaatccgtggagatacacgtactattgaccttt-cagccaatcacttgactggagaagtg |
19335029 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaat |
223 |
Q |
| |
|
|| ||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19335030 |
ccattggaattgtttcggcttgttcaagttcaaacattaaacttatctcacaat |
19335083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 19376592 - 19376716
Alignment:
| Q |
121 |
gataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcac |
220 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| || || || ||| ||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
19376592 |
gataggcgaactattgaccttt-catccaatagcttgtctggagaattgccattggaattgtttcaccttgttcaagttcaaacgttaaacttatctcac |
19376690 |
T |
|
| Q |
221 |
aatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
||| ||||| |||||||| |||||| |
|
|
| T |
19376691 |
aataattttgttggaacaataccaaa |
19376716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 19465329 - 19465440
Alignment:
| Q |
127 |
cgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcat |
226 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| ||||| || ||| ||| ||||| |||||||||||||||||||| || |||||||||||| | |
|
|
| T |
19465329 |
cgaactattgaccttc-cagccaatagcttgtctggagaagtgccattggaattgtttcggcttgttcaagttcaaacattgaacttatctcacaatagt |
19465427 |
T |
|
| Q |
227 |
tttactggaacaa |
239 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
19465428 |
ttgactggaacaa |
19465440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 19437924 - 19438045
Alignment:
| Q |
117 |
acaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||| |||||||||| ||||| || ||| ||| |||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
19437924 |
acaagaaaggcgaactattgaccttt-cagcgaataacttgtctggagaagtgccattggaattttttcagcttgttcaagttcaaacgttaaacttatc |
19438022 |
T |
|
| Q |
217 |
tcacaatcattttactggaacaa |
239 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
19438023 |
tcacaataattttgttggaacaa |
19438045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 19425609 - 19425784
Alignment:
| Q |
70 |
acaattgagttgtttcaaaaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtg |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| | | | | || ||||| |||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
19425609 |
acaattgagttgtttacaaaaggtcaagattatatgtatcgagtaagtccaaaaagacgaaccattgaccttt-cagcaaatagcttgtctggagaagtg |
19425707 |
T |
|
| Q |
170 |
tcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
| ||| ||| ||| | |||||||| ||||||| ||||| |||||||||||| |||| | |||||||| |||||| |
|
|
| T |
19425708 |
cctttggaattgtttaggcttgttcagcttcaaacgttaaacttatctcacaataatttgattggaacaataccaaa |
19425784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 16678187 - 16678304
Alignment:
| Q |
128 |
gaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcatt |
227 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| ||||| || ||| ||| ||||| ||||||||||| ||||| ||||| |||||||||||| ||| |
|
|
| T |
16678187 |
gaactattgaccttt-cagccaataacttgtctggagaagtgccattggaattgtttcggcttgttcaagtccaaaccttaaacttatctcacaataatt |
16678285 |
T |
|
| Q |
228 |
ttactggaacaacaccaaa |
246 |
Q |
| |
|
| | ||||| || |||||| |
|
|
| T |
16678286 |
tcagtggaaaaataccaaa |
16678304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 18016992 - 18017093
Alignment:
| Q |
121 |
gataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcac |
220 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||| ||||| ||||| || ||| ||| ||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
18016992 |
gataggcgaactattgaccttt-cagccaatcacttgactggagaagtgccattggaattgtttcggcttgttcaagttcaatcattaaacttatctcac |
18017090 |
T |
|
| Q |
221 |
aat |
223 |
Q |
| |
|
||| |
|
|
| T |
18017091 |
aat |
18017093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 18109419 - 18109512
Alignment:
| Q |
128 |
gaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaa |
222 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||| ||||| || ||| ||| |||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18109419 |
gaactattgaccttt-cagccaatagcttgcctggagaagtgccattggaattgtttctgcttgttcaagttcaaacattaaacttatctcacaa |
18109512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 19400698 - 19400823
Alignment:
| Q |
120 |
agataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctca |
219 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||||||||||||| || || || ||| ||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
19400698 |
agatagacgaattattgaccttt-caaccaatagcttgtctggggaactgccattggaattgtttcgacttgttcaagttcaaacgttaaacttatctca |
19400796 |
T |
|
| Q |
220 |
caatcattttactggaacaacaccaaa |
246 |
Q |
| |
|
|||| |||| | |||||||| |||||| |
|
|
| T |
19400797 |
caataatttgattggaacaataccaaa |
19400823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 246
Target Start/End: Original strand, 18166129 - 18166250
Alignment:
| Q |
124 |
aggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaat |
223 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||| |||| || ||| | | ||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
18166129 |
aggcgaactattgacattt-caaacaatagcttgtctggagaagtaccattggaaatgtttcggcttgttcaagttcaaacgttaaacttatctcacaat |
18166227 |
T |
|
| Q |
224 |
cattttactggaacaacaccaaa |
246 |
Q |
| |
|
|||| | ||||||| |||||| |
|
|
| T |
18166228 |
aatttgatcggaacaataccaaa |
18166250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 18872907 - 18872811
Alignment:
| Q |
122 |
ataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctca |
219 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| ||||| ||||| | ||| ||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
18872907 |
ataggcgaactattgaccttt-cagccaatcacttgactggagaagtgctattggaattgtttcagcttgttcaagttcaaacattaaacttatctca |
18872811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 17942927 - 17943038
Alignment:
| Q |
124 |
aggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaat |
223 |
Q |
| |
|
|||||||| |||||||||| | ||||||| ||| | |||| |||| || ||| ||| ||||| ||| |||||||||||||||| || |||||||||||| |
|
|
| T |
17942927 |
aggcgaacgattgaccttt-cggtcaataacttatttggagaagttccattggaattgtttcggcttattcaagttcaaacattgaacttatctcacaat |
17943025 |
T |
|
| Q |
224 |
cattttactggaa |
236 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
17943026 |
aatttgactggaa |
17943038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 19352363 - 19352486
Alignment:
| Q |
122 |
ataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcaca |
221 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||| |||| || ||| ||| ||||| |||| |||| ||||||| ||||| |||| ||||| |
|
|
| T |
19352363 |
ataggcgaactgttgaccttt-catccaatagcttgtctggagaagttccattggaattgtttcggcttgctcaacttcaaacgttaaacttatatcaca |
19352461 |
T |
|
| Q |
222 |
atcattttactggaacaacaccaaa |
246 |
Q |
| |
|
| |||| | |||||||| |||||| |
|
|
| T |
19352462 |
acaatttgattggaacaataccaaa |
19352486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 19354685 - 19354808
Alignment:
| Q |
121 |
gataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcac |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||| |||| || ||| ||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
19354685 |
gataggcgaactattgaccttt-cagtcaatcacttgataggagaagttacattggaattgtttcggcttgttcaagttcaaaccttaaacttatctcat |
19354783 |
T |
|
| Q |
221 |
aatcattttactggaacaacaccaa |
245 |
Q |
| |
|
||| | || | |||||||| ||||| |
|
|
| T |
19354784 |
aataacttgaatggaacaataccaa |
19354808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 13666013 - 13665863
Alignment:
| Q |
88 |
aaaggtcaagattatatgtataaagtgcgacaagataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgt |
187 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||| |||||||||||||||| ||| |||||||||| |||| || || || ||| |||||||| |
|
|
| T |
13666013 |
aaaggtcaagattatatgtatcaagtcaatccagatagacgaactattgaccttt-cagctaatagcttgtttggagaattgccactggaattatttcag |
13665915 |
T |
|
| Q |
188 |
cttgttcaagttcaaacattaaatttatctcacaatcattttactggaacaa |
239 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| |||||||||| |
|
|
| T |
13665914 |
cttgttcaagttcaaacattgaacttatctcacaataatttgactggaacaa |
13665863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 2709600 - 2709486
Alignment:
| Q |
124 |
aggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaat |
223 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| ||||| || ||| |||||||| ||||||||||||||| |||| || |||||||||||| |
|
|
| T |
2709600 |
aggcgaactattgaccttt-cagccaatagcttgtctggagaagtgccattggaattatttcaacttgttcaagttcaatcattgaacttatctcacaat |
2709502 |
T |
|
| Q |
224 |
cattttactggaacaa |
239 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
2709501 |
aatttgactggaacaa |
2709486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 15536509 - 15536627
Alignment:
| Q |
127 |
cgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcacaatcat |
226 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||| || || || ||| ||| ||||| ||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
15536509 |
cgaactattgaccttt-cagccaatagcttgtttggggaactgccattggaattgtttcggcttgttcaagttcaaacgttaaacttatctcacaataat |
15536607 |
T |
|
| Q |
227 |
tttactggaacaacaccaaa |
246 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
15536608 |
tttgttggaacaataccaaa |
15536627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 8460537 - 8460653
Alignment:
| Q |
122 |
ataggcgaactattgaccttttcagtcaatagcttgtctggaaaagtgtcaatggtattatttcgtcttgttcaagttcaaacattaaatttatctcaca |
221 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||||||| ||||| | ||| |||||||| |||||| |||||||||||||| || |||||||||| |
|
|
| T |
8460537 |
ataggcgaactattgaccttt-cagctaataacttgtctggagaagtgccgttggaattatttcatcttgtccaagttcaaacattgaacttatctcaca |
8460635 |
T |
|
| Q |
222 |
atcattttactggaacaa |
239 |
Q |
| |
|
|| |||| | |||||||| |
|
|
| T |
8460636 |
ataatttgattggaacaa |
8460653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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