View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_38 (Length: 244)
Name: NF9096_low_38
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 47267604 - 47267827
Alignment:
| Q |
7 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47267604 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtattgtcaatgcacgttcgaggtttaatgctaacaattc |
47267703 |
T |
|
| Q |
107 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttg |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47267704 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttatgctgtggagttg |
47267803 |
T |
|
| Q |
207 |
gtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
47267804 |
gtaagaaaattaaaagctgaagtt |
47267827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 47299251 - 47299028
Alignment:
| Q |
7 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| ||||||||||||| ||||||||| |
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| T |
47299251 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcgaggtttaatgttaacaattc |
47299152 |
T |
|
| Q |
107 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttg |
206 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||||| |
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| T |
47299151 |
gccacttgttggatactacggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtggaaacccatttggttatgcagtggagttg |
47299052 |
T |
|
| Q |
207 |
gtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
47299051 |
gtaagaaaattaaaagctgaagtt |
47299028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 47292644 - 47292421
Alignment:
| Q |
7 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
47292644 |
tttggtgttgtcgcacaaaagcattgcagttagaggcggataaagaggtacgaatgatgtgcgtcgtcaatgcacgctcgaggtttaacattaacaattc |
47292545 |
T |
|
| Q |
107 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttg |
206 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| |
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|
| T |
47292544 |
gccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttggttatgcagtggagttg |
47292445 |
T |
|
| Q |
207 |
gtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47292444 |
gtaagaaaattaaaagctgaagtt |
47292421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 47283569 - 47283792
Alignment:
| Q |
7 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattc |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||| ||||| ||||||||||| ||||||| ||| || |||| |
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|
| T |
47283569 |
tttggtgttgccgcacaaaagcattgcagttagagccagatgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattc |
47283668 |
T |
|
| Q |
107 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttg |
206 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||| |||||| || |||||||| ||||||||||||||||||||| | ||||||||| | ||||| ||| |
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| T |
47283669 |
gccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaagctttgtggaaaccctttaggttatgcagtggaattg |
47283768 |
T |
|
| Q |
207 |
gtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|||||||| ||||||| ||||| |
|
|
| T |
47283769 |
ataagaaaagcaaaagctcaagtt |
47283792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 47278976 - 47279199
Alignment:
| Q |
7 |
tttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattc |
106 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||||| || ||||||||||||| ||||| ||||||||||| ||||||| ||| || |||| |
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| T |
47278976 |
tttggtgttgccgtacaaaagcattgcagttagagccagatgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattc |
47279075 |
T |
|
| Q |
107 |
gccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttg |
206 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||| |||||| || |||||||| |||||||||||||||||||| | ||||||||| ||||| ||| |
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| T |
47279076 |
gccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaagctttgtggaaatcctttaggttatggagtggaattg |
47279175 |
T |
|
| Q |
207 |
gtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|||||||| ||||||| ||||| |
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| T |
47279176 |
ataagaaaagcaaaagctcaagtt |
47279199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 47242701 - 47242908
Alignment:
| Q |
8 |
ttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattcg |
107 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||| ||| |
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|
| T |
47242701 |
ttggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttct |
47242800 |
T |
|
| Q |
108 |
ccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttgg |
207 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | ||||||| |||||||| ||| | |||||||||||||| |||||||||| | ||||||||| |
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|
| T |
47242801 |
ttgtttgttggatattacggtaattgcattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttga |
47242900 |
T |
|
| Q |
208 |
taagaaaa |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
47242901 |
taagaaaa |
47242908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 47256825 - 47257050
Alignment:
| Q |
8 |
ttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaa---t |
104 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| ||||||| || | ||||||||||| ||||| |||||||| |||||||||| |||||| || | |
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|
| T |
47256825 |
ttggtgctgccgcacaaaagcattgcaggtagaaccagatgaagatgtgcgaatgatgtgcatcgttaatgcacgctcgaggtttagtgctaataaccgt |
47256924 |
T |
|
| Q |
105 |
tcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagt |
204 |
Q |
| |
|
||| | || ||||||| || || || ||| |||||| | ||||||| |||||||| ||| | |||||||||||||| |||||||||| | ||||||| |
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|
| T |
47256925 |
tcgtcgctcattggatattatggcaactgtattgctttctcggcggcagtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagt |
47257024 |
T |
|
| Q |
205 |
tggtaagaaaattaaaagctgaagtt |
230 |
Q |
| |
|
|| |||||||| ||||||| ||||| |
|
|
| T |
47257025 |
tgataagaaaagcaaaagctcaagtt |
47257050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 32731368 - 32731575
Alignment:
| Q |
8 |
ttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattcg |
107 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||| ||| |
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|
| T |
32731368 |
ttggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttct |
32731467 |
T |
|
| Q |
108 |
ccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattctgtggagttgg |
207 |
Q |
| |
|
|| ||||||| |||||||||||| |||||| | ||||||| |||||||| ||| | |||||||||||||| |||||||||| | ||||||||| |
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| T |
32731468 |
ttgtttattggatattacggtaattgtattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttga |
32731567 |
T |
|
| Q |
208 |
taagaaaa |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
32731568 |
taagaaaa |
32731575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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