View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_40 (Length: 241)
Name: NF9096_low_40
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42205880 - 42205657
Alignment:
| Q |
1 |
tgacagagaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205880 |
tgacaaagaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccg |
42205781 |
T |
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| Q |
101 |
agaagttttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205780 |
agaagttttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcat |
42205681 |
T |
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| Q |
201 |
tctggcagatttgtttggagatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42205680 |
tctggcagatttgtttggagatat |
42205657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42214748 - 42214525
Alignment:
| Q |
1 |
tgacagagaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214748 |
tgacaaagaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccg |
42214649 |
T |
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| Q |
101 |
agaagttttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214648 |
agaagttttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcat |
42214549 |
T |
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| Q |
201 |
tctggcagatttgtttggagatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42214548 |
tctggcagatttgtttggagatat |
42214525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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