View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_42 (Length: 240)
Name: NF9096_low_42
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 24038417 - 24038626
Alignment:
| Q |
18 |
acatcatcttctagagtacattttaaactatgaggaacaacatcaaacacaatacaattaaaatgtaaggaagagtgtctgagatttgctaatagatcag |
117 |
Q |
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| T |
24038417 |
acatcatcttctagagtacgtttaaaactatgaggaaaaacatcaaacacaatacaattaaaatgtaaggaagagtgtctgagatttgcaaataggtcag |
24038516 |
T |
|
| Q |
118 |
cacgctaattagccgcgcgatacacatggcaggctgaagtgtcccatccagggaggggggaagaga----gaccgcctcttgaagaaaaggttgattgaa |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24038517 |
cacgctaattagcagcgcgatacacatggcaggctgaagtgtcccatccagggaggggggaagagagaccgaccgcctcttgaagaaaaggttgattgaa |
24038616 |
T |
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| Q |
214 |
cgcatttgga |
223 |
Q |
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|||||||||| |
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| T |
24038617 |
cgcatttgga |
24038626 |
T |
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