View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_44 (Length: 229)
Name: NF9096_low_44
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 48274832 - 48275052
Alignment:
| Q |
6 |
acatataagttgttgcaatgcatattacgtacgtcaaa-gtttcaaatgcacaagtttatcctaaatggaatcctattctccacaaacattaattctgtt |
104 |
Q |
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| T |
48274832 |
acatataagttgttgcaatgcatattacgtacgtcaaaagtttcaaatgcacaagtttatcctaaatggaatcccattctccacaaacattaattttgtt |
48274931 |
T |
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| Q |
105 |
ggagttggaaatacctttgttcatatgaatgaatgaagtgtggtccattatggataaagattgcaattgccacgtattcaaattctgtctgtaatttcta |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48274932 |
ggagttggaaatacctttgttcatatga----atgaagtgtggtccattatggataaagattgcaattgccacgtatccaaattctgtctgtaatttcta |
48275027 |
T |
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| Q |
205 |
tgcctataaatatatgcagctagca |
229 |
Q |
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| T |
48275028 |
tgcctataaatatatgcagctagca |
48275052 |
T |
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